Pairwise Alignments

Query, 573 a.a., ATP-dependent DNA ligase from Methanococcus maripaludis S2

Subject, 834 a.a., ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 55.8 bits (133), Expect = 7e-12
 Identities = 76/325 (23%), Positives = 130/325 (40%), Gaps = 45/325 (13%)

Query: 249 FETKYDGARVQVHKSNGDVKIYSRRLENITNSVPELVEEIKKLDIDNIILEGECVAMDLD 308
           +E K+DG R+       DVK+++R   + T+ +  L + ++ + +     +GE V     
Sbjct: 229 YEIKFDGYRMLARVDGADVKLFTRNGHDWTHRLRPLHKALQDMQLPPGWYDGEIVVFG-G 287

Query: 309 SGKPRPFQDILRRFRRKYNIDKMAEKIALRIYFFDVLYY-NRGLIDTPLKTRREILEKLF 367
           +G P          ++    ++ A  +    Y FD+ Y     L   PL  RR +LE L 
Sbjct: 288 TGLPD-----FGALQQSLENERTASVV---FYLFDLPYVAGHDLRAAPLVARRAVLEGLL 339

Query: 368 GTNNWDSELEKIKKEIFSSKMLFSSFKLNSGDPNLVKEFFNWSLSIGHEGIMIKNPDAPY 427
                D+       E  ++ +L S+ +L                  G EG++ K   APY
Sbjct: 340 RERPMDAVRFSAVFEASAASVLMSACRL------------------GLEGVIAKRKSAPY 381

Query: 428 TPGSRVKTMYKVKPTLENLDVVVTRAKIGMGKRKDWYGSYELSVKDNDGNLHVIGNVGSG 487
              +R     K+K       V+    + G G R   +GS  L + + DG+L  +GNVG+G
Sbjct: 382 R-STRSADWLKLKCGQRQAFVIGGFTE-GKGSRTG-FGSLLLGLHEADGSLRHVGNVGTG 438

Query: 488 LTEDDLEKLTKIVNEIKIED--------LGEEVILEPKIVLEVTYEEIQTSEKYEMGYAL 539
                L  L + +  ++            G      P +V EV +     S+    G+ +
Sbjct: 439 FDTGTLSSLHRKLKALERRTSPFAQATIAGRPHWATPSLVAEVAF-----SDWTHAGH-I 492

Query: 540 RFPRVVQIREDKSINDINTLDDVKK 564
           R    V +REDK+   +    +V K
Sbjct: 493 RHAVFVGLREDKAAPAVEKEVEVPK 517