Pairwise Alignments

Query, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2

Subject, 827 a.a., DNA topoisomerase I from Rhodanobacter sp000427505 FW510-R12

 Score =  187 bits (474), Expect = 3e-51
 Identities = 173/590 (29%), Positives = 270/590 (45%), Gaps = 89/590 (15%)

Query: 4   LIICEKPNVAKKIAEALGKPKKKSHNSVPYYELERNGESIVVASAVGHLYTLQEK---TK 60
           L+I E P  AK I + LGK                      V ++ GH+  L+ K     
Sbjct: 5   LLIVESPAKAKTINKYLGK-------------------DFQVLASYGHVRDLKPKEGAVD 45

Query: 61  TKFGDYPVYDINWVPASTLDEKKYIQKYIDALKKVSKDANKFYVATDWDIEGELIGYHAL 120
           T+ G    Y++           +  +K++DA+ K +K A+  Y+ATD D EGE I +H  
Sbjct: 46  TEHGFAMAYEVI----------ERNEKHVDAIAKAAKLADDIYLATDLDREGEAISWHIS 95

Query: 121 NFSCGQ-----KNAHRLRFSSLTKKEILKAYENPNEIDFGLVDAGDSRHKIDWYFGINVS 175
                +     K  HR+ FS +T K I  A   P ++   LVDA  +R  +D+  G N+S
Sbjct: 96  EILKQRGLVKGKQMHRVVFSEITPKAIKAAVAAPRQLSHDLVDAQQARRALDYLVGFNLS 155

Query: 176 RALMQAVSSVKRWKTLSTGRVQGPALAFLVDKELEIRNFVPTPYWVLEALL---DNDLIA 232
             L + V      + LS GRVQ PAL  +V++E EI  F    YW +EA L   + D  A
Sbjct: 156 PVLWRKVQ-----RGLSAGRVQSPALRMIVEREEEIEAFKAREYWTIEAQLKHAEGDFTA 210

Query: 233 V------HELEKF--WDEEQANKAYEKVK--GQKQATVSDVKKSMKTIPPNPPFDLGALQ 282
                   + E+F    E  A  A + +K   + + TVS+V    +   P  PF    LQ
Sbjct: 211 RLSRLNGKKFEQFDLTSEADALAARDALKQAARGRLTVSEVSSKERKRRPAAPFTTSTLQ 270

Query: 283 REAHNMFRFSPKKTQEVAQKLYEK---------GYCSYPRTSSQKLPDDKAYMDEVLKNL 333
           +EA     F+  +T +VAQ LYE          G  +Y RT S  L DD   + E+ + +
Sbjct: 271 QEAARKLGFTTSRTMKVAQGLYEGVALGSEGNVGLITYMRTDSTMLGDDA--VAELRQLI 328

Query: 334 SKNKNYKPYIETILNENRKPISGKNDDPAHPAVH---AVDVPKEK---LPDDELKLYELI 387
           +++   +   +       K    KN   AH A+    A+  PK     L DD+ KLYELI
Sbjct: 329 ARDFGSQALPDAPQMYKTK---SKNAQEAHEAIRPTSAMHTPKSVASFLNDDQRKLYELI 385

Query: 388 ARRTIALYWDNAKREYSKINLDING-----ETFKLSGSRTVEEGWHEIYYYTKF-----D 437
            +RT+A    +A          + G       F+ SG+  V+ G+  +Y   +      D
Sbjct: 386 WKRTVACQMIHATLNTVTAEFAVRGVAGGDAAFRASGTTVVDPGFLAVYEEGRDQKGAED 445

Query: 438 EVE---LPELKKNDVINVNNINFEAKETKPPKRYTMASIIKELEKRKLGTKATRADILEK 494
           + E   LP L  ++ + +++I  +   T+PP RY+ AS++K LE+  +G  +T A I++ 
Sbjct: 446 DDEGRRLPRLAVDEQVPLHDIAADQHFTEPPPRYSEASLVKTLEEYGIGRPSTYASIIQV 505

Query: 495 LTKRGYVIEDG-SLTVTDLGIGVTETLRKYCPEIVEETLTRDLEDKLELI 543
           L  R YV  D      +D+G  V++ L ++    V+   T  +ED+L+ +
Sbjct: 506 LQNREYVFLDSRRFKPSDVGRAVSKFLTQHFTRYVDYDFTAKMEDELDAV 555