Pairwise Alignments

Query, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2

Subject, 873 a.a., DNA topoisomerase I from Pseudomonas simiae WCS417

 Score =  241 bits (616), Expect = 1e-67
 Identities = 227/821 (27%), Positives = 360/821 (43%), Gaps = 95/821 (11%)

Query: 4   LIICEKPNVAKKIAEALGKPKKKSHNSVPYYELERNGESIV----------VASAVGHLY 53
           L+I E P  AK I + LG       +     +L  +G +             A+  G + 
Sbjct: 5   LVIVESPAKAKTINKYLGNEYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAAGEGPVL 64

Query: 54  TLQEKTK----TKFGDYPVYDINWVPASTLDEKKYIQKYIDALKKVSKDANKFYVATDWD 109
           T +EK +    ++ G  P  D  W     +   K  +K I+ L++++KDA+  Y+ATD D
Sbjct: 65  TPKEKARKQLVSRMGVDP--DHGWKAKYEILPGK--EKVIEELRRLAKDADTIYLATDLD 120

Query: 110 IEGELIGYHALNFSCGQKNAH-RLRFSSLTKKEILKAYENPNEIDFGLVDAGDSRHKIDW 168
            EGE I +H      G  + + R+ F+ +TKK I +A+  P E+D   V+A  +R  +D 
Sbjct: 121 REGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSKPGELDIDRVNAQQARRFLDR 180

Query: 169 YFGINVSRALMQAVSSVKRWKTLSTGRVQGPALAFLVDKELEIRNFVPTPYWVLEALLDN 228
             G  VS  L   ++     + LS GRVQ  A+  +V++E EIR F+P  YW + A L  
Sbjct: 181 VVGYMVSPLLWAKIA-----RGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEVHADLGT 235

Query: 229 DLIAVHELE---------KFWDEEQANKAYEKVKGQKQATVSDVKKSMKTIPPNPPFDLG 279
              A    E         K  +E QA  A EK+K    + V    K   +  P+ PF   
Sbjct: 236 AKGANVRFEVAREKGEAFKPLNEAQAMAALEKLKSSSYSIVKREDKPTSS-KPSAPFITS 294

Query: 280 ALQREAHNMFRFSPKKTQEVAQKLYEKGYCSYPRTSSQKLPDDKAYMDEVLKNLSKNKNY 339
            LQ+ A N   F  KKT  +AQ+LYE GY +Y RT S  L  D   M          K Y
Sbjct: 295 TLQQAASNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSVDAVAMARTYIEEEFGKKY 354

Query: 340 KPYIETILNENRKPISGKNDDPAHPAVHAVDVPKEK-----LPDDELKLYELIARRTIAL 394
            P    + +      S +    AH A+   D          +  D  +LYELI R+ +A 
Sbjct: 355 LPEKPNVYS------SKEGAQEAHEAIRPSDANTTPAKLSGMERDAERLYELIWRQFLAC 408

Query: 395 YWDNAKREYSKINLDINGETFKLSGSRTVEEGWHEIY--YYTKFDEVELPELKKNDVINV 452
               A+   + + +  +    +  G     +G+  +        D+  LP++ + D + +
Sbjct: 409 QMLPAQYLSTTVTVAASDFELRAKGRILKFDGYTRVMPQIAKPGDDDVLPDMAQGDTLKL 468

Query: 453 NNINFEAKETKPPKRYTMASIIKELEKRKLGTKATRADILEKLTKRGYV-IEDGSLTVTD 511
             ++     TKPP RY+ AS++KE+EKR +G  +T A I+  +  RGYV + +       
Sbjct: 469 ITLDPSQHFTKPPARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVALHNRRFYSEK 528

Query: 512 LGIGVTETLRKYCPEIVEETLTRDLEDKLELIQDKKIKKEEVIQETKDKLTKILGEFRLK 571
           +G  VTE L +    +++   T  +E+ L+ +   +       ++ K+ L +  G+F+ K
Sbjct: 529 MGDIVTERLSESFSNLMDYGFTAGMEENLDDVAQGE-------RDWKNVLDEFYGDFKKK 581

Query: 572 EKEIGTELVDKLDSTNRSLQIIG---KCKCGGDMIIIRTKGKKRFVGCSNY-----PDCE 623
                 E+ +  +S  R+ Q +     C+  G  + IRT     F+GCS Y       C+
Sbjct: 582 -----LEVAESPESGMRANQPVMTDIPCQTCGRPMQIRTASTGVFLGCSGYSLPPKERCK 636

Query: 624 VTFPLPQKGRIKVLNE---------------VCEKCQNPVIGLDRIKICV---NPDCSTR 665
            T  L     I   +E               +C    +  +  ++ K+ +   NPDC+  
Sbjct: 637 ATVNLVPGDEIAADDEGESESLVLRGKHRCPICSTAMDAYLLDEKHKLHICGNNPDCNGY 696

Query: 666 ISEEDKKEIEKAEKEEKICPKCGNKLLIKKGPYGVFRGCENYPKCKYTEKL--NGESNEK 723
             EE    I+  E     C KCG+++ +K G +G F GC N P CK T KL  +G++   
Sbjct: 697 EIEEGTYRIKGYEGPSLECDKCGSEMQLKTGRFGKFFGCTN-PTCKNTRKLLKSGDAAPP 755

Query: 724 EIVG------KCPKCGSDLYKRKGRFGEFIGCSNYPKCRHT 758
           ++        KC K       R G  G F+  S +PK R T
Sbjct: 756 KMDPVKMPELKCEKVNDTYILRDGASGLFLAASQFPKNRET 796