Pairwise Alignments

Query, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2

Subject, 815 a.a., DNA topoisomerase I from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  185 bits (470), Expect = 8e-51
 Identities = 225/887 (25%), Positives = 353/887 (39%), Gaps = 145/887 (16%)

Query: 4   LIICEKPNVAKKIAEALGKPKKKSHNSVPYYELERNGESIVVASAVGHLYTLQEKTKT-- 61
           L+I E P  AK I   LGK                     VV S+ GH+  L +      
Sbjct: 5   LVIVESPAKAKTIEGYLGK-------------------DFVVKSSFGHVRDLPKGNNAID 45

Query: 62  -KFGDYPVYDINWVPASTLDEKKYIQKYIDALKKVSKDANKFYVATDWDIEGELIGYHAL 120
            + G  P Y ++        +KK +   +  L+K++K+A   ++A+D D EGE I +H  
Sbjct: 46  VEHGFKPTYVVS-------SDKKEV---VAQLRKLAKEAEMVWLASDDDREGEAISWHLT 95

Query: 121 N-FSCGQKNAHRLRFSSLTKKEILKAYENPNEIDFGLVDAGDSRHKIDWYFGINVSRALM 179
                      R+ F  +TK  IL A   P  ID  LV+A  +R  +D   G  +S  L 
Sbjct: 96  EALDLNDAKTRRIVFREITKNAILNAISTPRGIDMDLVNAQQARRILDRLVGFELSPVLW 155

Query: 180 QAVSSVKRWKTLSTGRVQGPALAFLVDKELEIRNFVPTPYWVLEALLD--NDLIAVHELE 237
           + + +      LS GRVQ  A+  +V++E EI  F     + + A  D     +      
Sbjct: 156 KKIKT-----GLSAGRVQSVAVRLVVEREREIERFKAEATFRVTASFDVQGRTLEAELPH 210

Query: 238 KFWDEEQANKAYEKVKGQKQATVSDVKKSMKTIPPNPPFDLGALQREAHNMFRFSPKKTQ 297
           KF  EE+A    +   G +    +  KK +K  P  PPF    LQ+EA     FS  +T 
Sbjct: 211 KFKTEEEAQAFLQACVGAEYKIENLEKKPLKRSPA-PPFTTSTLQQEASRKLYFSVAQTM 269

Query: 298 EVAQKLYEKGYCSYPRTSSQKLPDDKAYMDEVLKNLSKNKNYKPYIETILNENRKPISGK 357
            VAQ+LYE G  SY RT S  L       DE ++  ++      + E  +   R      
Sbjct: 270 TVAQRLYESGKISYMRTDSVNL------SDEAIQGATREIT-SSFGENFVKTRRFKTKSA 322

Query: 358 NDDPAHPAVHAVDVPKEKLPDD--ELKLYELIARRTIALYWDNAKREYSKINLDIN---G 412
           +   AH A+   D  +     D  E +LYELI +R IA    +A+ E + + + I+    
Sbjct: 323 SAQEAHEAIRPTDFSQMVASSDRNEQRLYELIWKRAIASQMADAEIEKTTVTIGISTQPD 382

Query: 413 ETFKLSGSRTVEEGWHEIYYYTKFDEVE---------LPELKKNDVINVNNINFEAKETK 463
           +  + +G     EG+ ++Y  +K DE +         LP L     I++  +    + T+
Sbjct: 383 QKLQATGEVIKFEGFLKVYIESKDDEEDGADDDVKGMLPPLSIGQGISLRQMLATQRFTR 442

Query: 464 PPKRYTMASIIKELEKRKLGTKATRADILEKLTKRGYVIED------------------- 504
           P  RYT AS++K+LE+  +G  +T A  +  + KRGYV +D                   
Sbjct: 443 PAARYTEASLVKKLEEMGIGRPSTYAPTISTIQKRGYVEKDTREGKERNYQVLTLKGSDI 502

Query: 505 -------------GSLTVTDLGIGVTETLRKYCPEIVEETLTRDLEDKLELIQDKKIKKE 551
                          L  TD  + V + L ++ P +++ + T  +E + + I   + + E
Sbjct: 503 TTQTKTEITGAEKAKLFPTDTAMVVNDFLVEHFPNVIDYSFTARVEAEFDEIAQGQKEWE 562

Query: 552 EVIQETKDKLTKILGEFR-------LKEKEIGTE------LVDKLDSTNRSLQIIGKCKC 598
            ++ +   K  K +              +E+GT+      +V KL      +Q+  + + 
Sbjct: 563 NMLDQFYQKFHKRIESSENISRADVSGARELGTDPVTGKTIVAKLGRFGPYVQLGEENEE 622

Query: 599 GGDMIIIRTKGKKRFVGCSNYPDCEVTFPLPQKGRIKVLNEVCEKCQNPVIGLDRIKICV 658
            G+  +  +  K +F+      D    F LP     +++    +K     IG     I  
Sbjct: 623 TGEKPVYASLRKGQFIESLALEDALELFKLP-----RIVGTYEDKDMTAAIGRFGPYIRH 677

Query: 659 NPDCSTRISEEDKKEIEKAEKEEKICPKCGNKLLIKKGPYGVFRGCENYPKCKYTEKLNG 718
           N   S   S     +  K   EE +       L+  K      +  +++P+    + LNG
Sbjct: 678 N---SKFYSLPKTLDPLKVTAEEAVA------LIEAKRKADAEKLIKSFPENPDIQVLNG 728

Query: 719 ESNEKEIVG----KCPKCGSDLYKRKGRFGEFIGCSNYPKCRHTEKIDKKKEDTPGETKA 774
                 + G    K PK                     P     E+     E TP E K 
Sbjct: 729 RYGPYIVAGKKNVKIPK------------------DKEPSELTLEECIALAEATP-EKKG 769

Query: 775 ETKKEAKPKTTKKAAPKKTATKTTKTTAKKTATKKTTTKKATAKKTA 821
               + K    K AA KKTATK  K+T KK A KK   KK  AKK A
Sbjct: 770 RGGFKKKADAEKPAAEKKTATK-AKSTTKKAAAKKPAAKKPAAKKKA 815