Pairwise Alignments

Query, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2

Subject, 638 a.a., DNA topoisomerase III from Pantoea agglomerans CFBP13505 P0401

 Score =  162 bits (411), Expect = 4e-44
 Identities = 161/616 (26%), Positives = 272/616 (44%), Gaps = 61/616 (9%)

Query: 4   LIICEKPNVAKKIAEALGKPKKKSHNSVPYYELERNGESIVVASAVGHLYTLQEKTK--T 61
           L I EKP++ + IA+ L KP ++    +        G   +V   VGHL    +     +
Sbjct: 3   LFIAEKPSLGRAIADVLPKPHRRGDGFIAC------GNDQIVTWCVGHLLEQAQPDSYDS 56

Query: 62  KFGDYPVYDINWVPAS-TLDEKKYIQKYIDALKKVSKDANKFYVATDWDIEGELIGYHAL 120
           ++  + + D+  +P    L  +  + K +  ++ +   AN+   A D D EG+L+    L
Sbjct: 57  RYARWSLADLPIIPEKWQLKPRPSVAKQLKVVEGLLAQANEVVHAGDPDREGQLLVDEVL 116

Query: 121 NF----SCGQKNAHRLRFSSLTKKEILKAYEN--PNEIDFGLVDAGDSRHKIDWYFGINV 174
           ++    +  +    R   + L  + + +A      N     L  +  +R + DW +GIN+
Sbjct: 117 DYLNLPAEKRSKVQRCLINDLNPQAVDRAVNRLRENREFIPLCVSALARARADWLYGINM 176

Query: 175 SRALMQAVSSVKRWKTLSTGRVQGPALAFLVDKELEIRNFVPTPYWVLEA-LLDND---- 229
           +RA      +      LS GRVQ P L  +V ++ EI NFVP  Y+ ++A +L  D    
Sbjct: 177 TRAWTLLGRNAGYDGVLSVGRVQTPVLGLVVRRDEEIENFVPKDYFEVKAHILTPDGARF 236

Query: 230 ---LIAVHELEKFWDEEQ-------ANKAYEKVKGQKQATVSDVKKSMKTIPPNPPFDLG 279
               I     E + DEE        A     ++ GQ     +   K    + P P F L 
Sbjct: 237 IASWIPSEACEPWQDEEGRLLKRALAEHVVARITGQPAIVTAYSDKRENEVAPLP-FSLS 295

Query: 280 ALQREAHNMFRFSPKKTQEVAQKLYEKG-YCSYPRTSSQKLPDDK-AYMDEVLKNLSKNK 337
           +LQ EA   +  S +   +  Q+LYE     +YPR+ S+ LP++  A    VLK +  ++
Sbjct: 296 SLQIEAAKRYGLSAQTVLDTCQRLYETHKLITYPRSDSRYLPEEHFAGRHAVLKAIQAHQ 355

Query: 338 NY-KPYIETILNENRKPISGKNDDPAHPAVHAVDVPKEKLPDDELKLYELIARRTIALYW 396
           +   P  +   +   +    K  D  H  +        KL ++E  +YEL+AR+ +  + 
Sbjct: 356 SQLTPPADFDADRRNRCWDDKKVDAHHAIIPTARASAVKLSENEQHIYELVARQYLMQFC 415

Query: 397 DNAKREYSKINLDINGETFKLSGSRTVEEGWHEIYYYTKFDE----VELPELKKNDVINV 452
            +A      I+LDI G  F        E GW  +    + DE    + LP + K D +  
Sbjct: 416 PDAVFRKCVIDLDIAGGKFVAKARFLAEAGWRALLGNKERDEENDGMPLPVVAKGDELLC 475

Query: 453 NNINFEAKETKPPKRYTMASII------------KELEK-----RKLGTKATRADILEKL 495
                 AK+T+PP+ +T A+I+            KEL+K       LGT+ATRA I+E L
Sbjct: 476 ERGEVLAKQTQPPRPFTDATILSAMTGIARFVQDKELKKVLRATDGLGTEATRAGIIELL 535

Query: 496 TKRGYVIEDGS-LTVTDLGIGVTETLRKYCPEI-VEETLTRDLEDKLELIQDKKIKKEEV 553
            +RG++++ G  +  TD G  +  +L    P++     +T   E  L  I +K  + +E 
Sbjct: 536 FRRGFLVKKGRYINSTDAGRALIHSL----PDLAARPDMTAQWESTLTRISEKACRYDEF 591

Query: 554 IQETKDKLTKILGEFR 569
           +Q     LT ++ + R
Sbjct: 592 MQPLVQTLTGLIQQAR 607