Pairwise Alignments

Query, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2

Subject, 896 a.a., type I DNA topoisomerase from Magnetospirillum magneticum AMB-1

 Score =  191 bits (486), Expect = 1e-52
 Identities = 190/714 (26%), Positives = 304/714 (42%), Gaps = 116/714 (16%)

Query: 40  GESIVVASAVGHLYTLQEKTKTKFGDYPVYDINWVPASTLDEKKYIQKYIDALKKVSKDA 99
           G    V ++ GH+  L  K  +   D   + ++W      D K   ++ I  +    K A
Sbjct: 20  GSDFHVLASYGHIRDLPPKDGSVRPDEG-FAMDW----ETDPKS--ERQIKEIVAAVKGA 72

Query: 100 NKFYVATDWDIEGELIGYHALNFSCGQK-----NAHRLRFSSLTKKEILKAYENPNEIDF 154
           +K ++ATD D EGE I +H       +K        R+ F+ +TK  +L A  NP EI  
Sbjct: 73  DKLFLATDPDREGEAISWHVRQVLEARKALKGVEVKRVVFNEITKSAVLDAMRNPREIHQ 132

Query: 155 GLVDAGDSRHKIDWYFGINVSRALMQAVSSVKRWKTLSTGRVQGPALAFLVDKELEIRNF 214
            LVDA  +R  +D+  G  +S  L + +   +     S GRVQ  AL  + ++E EI +F
Sbjct: 133 ELVDAYLARRALDYLVGFTLSPVLWRKLPGSR-----SAGRVQSVALRLICERESEIESF 187

Query: 215 VPTPYWVLEA--------LLDNDL--IAVHELEKF--WDEEQANKAYEKVKGQKQATVSD 262
            P  YW + A        LL   L  +   +L+KF    E  A  A  K    + A V+ 
Sbjct: 188 KPREYWTIAADFLTPKGALLSAGLTHLGGKKLDKFDLSSEALARDAESKAASARYA-VAA 246

Query: 263 VKKSMKTIPPNPPFDLGALQREAHNMFRFSPKKTQEVAQKLYEK--------GYCSYPRT 314
           V++      P PPF    LQ+EA     F+  +T ++AQ+LYE         G  +Y RT
Sbjct: 247 VERKRTRRNPYPPFTTSTLQQEASRKLYFAAARTMQLAQRLYEGVDIGGETVGLITYMRT 306

Query: 315 SSQKLPDDKAYMDEVLKNLSKNKNYKPYIETILNENRKPISGKNDDPAHPAVHAVDVPKE 374
              ++  +       +      K Y P    +          KN   AH A+   D+ + 
Sbjct: 307 DGVQMAAEAIAGARAVIAQDFGKVYVPEAPRVYKTK-----AKNAQEAHEAIRPTDLARR 361

Query: 375 K------LPDDELKLYELIARRTIALYWDNAKREYSKINLDINGE----TFKLSGSRTVE 424
                  L  D+L+LYELI +RT+A     A  E  ++ +DI G+     F+ +GS  V 
Sbjct: 362 PEDVARYLDKDQLRLYELIWKRTLASQM--AAAELDQVGVDIAGDQHGIVFRATGSVVVF 419

Query: 425 EGWHEIYYYTKFD------EVELPELKKNDVINVNNINFEAKETKPPKRYTMASIIKELE 478
           +G+ ++Y   K D      E  LP++ + D ++   +  E   T+PP R++ AS++K +E
Sbjct: 420 DGFLKVYREDKDDSDDEDAEKLLPDVTEKDAMDRKAMRTEQHFTQPPPRFSEASLVKRME 479

Query: 479 KRKLGTKATRADILEKLTKRGYV-IEDGSLTVTDLGIGVTETLRKYCPEIVEETLTRDLE 537
           +  +G  +T A IL  L +R YV ++       D G  VT  L  +    VE   T DLE
Sbjct: 480 ELGIGRPSTYASILSVLQERNYVRLDQRRFIPEDRGRLVTAFLESFFGRYVEYNFTADLE 539

Query: 538 DKLELIQDKKIKKEEV-----------IQETKD-KLTKILGEFRLKEKEIGTELVDKLDS 585
           ++L+ +   +    +V           + ETKD ++ ++L      ++ +G       + 
Sbjct: 540 NQLDDVSGGRDDWRKVLDRFWRDFSGAVDETKDLRVAQVLDAL---DELLGPHFFPD-NG 595

Query: 586 TNRSLQIIGKCKCGGDMIIIRTKGKKRFVGCSNYPDCEVTFPLPQKGRIKVLNEVCEKCQ 645
           T    +    C  G   + +   G   F+GCS YP+C  T PL   G             
Sbjct: 596 TGHDPRSCPTCNAGRLSLKLGKFG--AFIGCSAYPECRFTRPLTTGG------------- 640

Query: 646 NPVIGLDRIKICVNPDCSTRISEEDKKEIEKAEKEEKICPKCGNKLLIKKGPYG 699
                                  E ++E+ +  KE    P+ G  + ++KGPYG
Sbjct: 641 -----------------------EGEEEVREGPKELGNDPESGLPVTLRKGPYG 671



 Score = 51.6 bits (122), Expect = 2e-10
 Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 11/113 (9%)

Query: 680 EEKICPKCG-NKLLIKKGPYGVFRGCENYPKCKYTEKL-NGESNEKEI------VGKCPK 731
           + + CP C   +L +K G +G F GC  YP+C++T  L  G   E+E+      +G  P+
Sbjct: 599 DPRSCPTCNAGRLSLKLGKFGAFIGCSAYPECRFTRPLTTGGEGEEEVREGPKELGNDPE 658

Query: 732 CGSDLYKRKGRFGEFIGCSNYPKCR-HTEKIDKKKEDTPGETKAETKKEAKPK 783
            G  +  RKG +G ++   +    +     + +K +  P   KA   K  KPK
Sbjct: 659 SGLPVTLRKGPYGHYVQLGDETTLKAEPAPVPEKGKKAPKTAKA--VKAPKPK 709