Pairwise Alignments

Query, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2

Subject, 669 a.a., DNA topoisomerase III from Erwinia amylovora T8

 Score =  191 bits (485), Expect = 1e-52
 Identities = 179/676 (26%), Positives = 294/676 (43%), Gaps = 88/676 (13%)

Query: 4   LIICEKPNVAKKIAEALGKPKKKSHNSVPYYELERNGESIVVASAVGHLYTLQEKTKTKF 63
           L +CEKP+ AK IA  LG  ++             +G ++ V+ A+GHL  L++     +
Sbjct: 3   LYLCEKPSQAKDIARVLGISQRGQGFI--------SGGNVTVSWAIGHL--LEQAGPDAY 52

Query: 64  GDYPVYDINW-------VPAS-TLDEKKYIQKYIDALKKVSKDANKFYVATDWDIEGELI 115
           G+   Y   W       +P S  +  K   +     +  + K A++  +ATD D EGE+I
Sbjct: 53  GEQ--YGNPWKAEVLPIIPESWQMVVKSQTKAQFSVISNLLKTASEVIIATDADREGEVI 110

Query: 116 GYHALNFSCGQKNAHRLRFSSLTKKEILKAYEN--PNEIDFGLVDAGDSRHKIDWYFGIN 173
               L +   +    RL  S+L +  +  A  N  P E    L DAG  R + DW  G+N
Sbjct: 111 ARELLEYCRYKGTVRRLWLSALDETSVRNALANILPGEKTEKLYDAGKGRSRADWLIGMN 170

Query: 174 VSRALMQAVSSVKRWKTLSTGRVQGPALAFLVDKELEIRNFVPTPYWVLEALLDNDLIAV 233
           ++R            + LS GRVQ P LA +V+++  I NFV  P+W + A+++ D +  
Sbjct: 171 LTRLYTVKARDAGISEVLSIGRVQTPTLAIVVNRDNAIANFVSVPWWQVNAVIEKDGVRF 230

Query: 234 ----HELEKFWDEEQ-------ANKAYEKVKGQKQATVSDVKKSMKTIPPNPPFDLGALQ 282
                   ++ DEE+       A    +  + QK A+V +V +     P    FDLG LQ
Sbjct: 231 RAQWQPAAQYCDEEKHCINHQAARAVIQLCQQQKSASVLEVNQKRVKTPAPLCFDLGTLQ 290

Query: 283 REAHNMFRFSPKKTQEVAQKLYEKGYC-SYPRTSSQKLPDDKAYMDEVLKNLSKNKNYKP 341
                 F     +   +AQ LYE     +YPRT    LP+  + + E+ + LS      P
Sbjct: 291 VACSRKFGLGANEVLSIAQSLYETHKATTYPRTDCGFLPE--SMLKEIPEVLSAVGKSDP 348

Query: 342 YIETILNE-NRKPISGKNDDPAHPAVHAVDVPKE-----KLPDDELKLYELIARRTIALY 395
            + + L+  +++ +S   +D    A HA+   ++     KL  +E+K+Y LI +  +A +
Sbjct: 349 SVASSLDMLDKQFVSRVWNDKKITAHHAIIPTRQVFDLSKLSANEMKVYGLIRQHYLAQF 408

Query: 396 WDNAKREYSKINLDINGETFKLSGSRTVEEGWHEIYYYTKFDEVE--------LPELKKN 447
               + + ++ + +I G+ F+  G   V  GW  ++     D+ +        LP L KN
Sbjct: 409 LPLQESDTTEASFNIGGQLFRTRGKVNVVTGWMRLFEAESNDDADDVENEDMSLPSLVKN 468

Query: 448 DVINVNNINFEAKETKPPKRYTMASIIKEL-----------------EKRKLGTKATRAD 490
           D+  V+    +  +TKPPK +T  ++I  +                 +   LGT+ATRA 
Sbjct: 469 DICVVSGSELKDMKTKPPKPFTEGTLIAAMKNAASFVTDPKLKKVLRDNAGLGTEATRAG 528

Query: 491 ILEKLTKRGYVIEDG-SLTVTDLGIGVTETLRKYCPEIVEETLTRDLEDKLELIQDKKIK 549
            LE L  R Y+ + G ++  T +     E +      +    +T   E  L+ I   K+ 
Sbjct: 529 ALETLFSRHYLEKKGKNIQSTQM---AKELIAALPETLTSPGMTALWEQALDDIAQGKMS 585

Query: 550 KEEVIQETKDKLTKILGEFRLKEKEIGTELVD--KLDSTNRSLQIIGKCKCGGDMIIIRT 607
                          L EF  K+++    LVD  K D  N ++ +   C     +   R 
Sbjct: 586 ---------------LNEFMQKQRQWTMHLVDKGKSDVVNITVPVGPPCPICNGLTRKRN 630

Query: 608 KGKKRFVGCSNYPDCE 623
             K  F GC  YPDC+
Sbjct: 631 GKKGDFWGCIKYPDCK 646



 Score = 37.0 bits (84), Expect = 4e-06
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 729 CPKCGSDLYKRKGRFGEFIGCSNYPKCRHTEKIDKKKEDTPGETKAETKKE 779
           CP C     KR G+ G+F GC  YP C+     + KK+      KA T ++
Sbjct: 619 CPICNGLTRKRNGKKGDFWGCIKYPDCKGVINSNSKKKSV--YKKASTSRK 667



 Score = 32.0 bits (71), Expect = 1e-04
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 684 CPKCGNKLLIKKGPYGVFRGCENYPKCKYTEKLNGESNEKEIVGK 728
           CP C      + G  G F GC  YP CK    +N  S +K +  K
Sbjct: 619 CPICNGLTRKRNGKKGDFWGCIKYPDCKGV--INSNSKKKSVYKK 661