Pairwise Alignments

Query, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2

Subject, 635 a.a., DNA topoisomerase III, bacteria and conjugative plasmid from Enterobacter asburiae PDN3

 Score =  153 bits (386), Expect = 3e-41
 Identities = 157/616 (25%), Positives = 272/616 (44%), Gaps = 61/616 (9%)

Query: 4   LIICEKPNVAKKIAEALGKPKKKSHNSVPYYELERNGESIVVASAVGHLYTLQEKT--KT 61
           L I EKP++A+ IA+ L KP +K    +        G   VV   +GHL    +     +
Sbjct: 3   LFIAEKPSLARAIADVLPKPHRKGDGFIEC------GNGQVVTWCIGHLLEQAQPDVYDS 56

Query: 62  KFGDYPVYDINWVPAS-TLDEKKYIQKYIDALKKVSKDANKFYVATDWDIEGELIGYHAL 120
           ++  + + D+  VP    L  +  + K ++ +K+   +A +   A D D EG+L+    L
Sbjct: 57  RYARWNLNDLPIVPEKWRLQPRPSVTKQLNVIKRFLHEAAEIVHAGDPDREGQLLVDEVL 116

Query: 121 NF----SCGQKNAHRLRFSSLTKKEILKAYEN--PNEIDFGLVDAGDSRHKIDWYFGINV 174
           ++       ++   R   + L  + + +A      N     L  +  +R + DW +GIN+
Sbjct: 117 DYLELAPEKRQQVQRCLINDLNPQAVERAISRLRANSEFIPLCVSALARARADWLYGINM 176

Query: 175 SRALMQAVSSVKRWKTLSTGRVQGPALAFLVDKELEIRNFVPTPYWVLEALL----DNDL 230
           +RA      +      LS GRVQ P L  +V ++ +I NFV   ++ ++A +    D   
Sbjct: 177 TRAYTILGRNAGYQGVLSVGRVQTPVLGLVVRRDEDIENFVAKDFFEVKAHIVTPKDERF 236

Query: 231 IAVHE----LEKFWDEEQ-------ANKAYEKVKGQKQATVSDVKKSMKTIPPNPPFDLG 279
            AV +     E + DEE        A+    ++ GQ  A V+      ++ P   PF L 
Sbjct: 237 TAVWQPSDACESYQDEEGRLLHRPLADHVVNRITGQP-AIVTSYNDKRESEPAPLPFSLS 295

Query: 280 ALQREAHNMFRFSPKKTQEVAQKLYE-KGYCSYPRTSSQKLPDDK-AYMDEVLKNLSKN- 336
           ALQ EA   F  S +   ++ QKLYE     +YPR+ S+ LP++  A    V+  +  + 
Sbjct: 296 ALQIEAAKKFGLSAQNVLDICQKLYETHKLITYPRSDSRYLPEEHFAGRHSVMNAIGVHA 355

Query: 337 KNYKPYIETILNENRKPISGKNDDPAHPAVHAVDVPKEKLPDDELKLYELIARRTIALYW 396
            +  P      + + +    K  D  H  +         L D+E K+Y LIAR+ +  + 
Sbjct: 356 PDLLPQPAVNPDTHNRCWDDKKVDAHHAIIPTARASSVNLTDNEAKVYNLIARQYLMQFC 415

Query: 397 DNAKREYSKINLDINGETFKLSGSRTVEEGWHEIYYYTKFDE----VELPELKKNDVINV 452
            +A      I L+I    F        E GW  +    + DE      LP + K+D +  
Sbjct: 416 PDAVFRKCVIELEIAKGKFVAKARFLAEAGWRTLLGNKERDEENDGTPLPVVAKDDELLC 475

Query: 453 NNINFEAKETKPPKRYTMASII------------KELEK-----RKLGTKATRADILEKL 495
                  ++T+PP+ +T A+++            K+L+K       LGT+ATRA I+E L
Sbjct: 476 EKGEVVERQTQPPRHFTDATLLSAMTGIARFVQDKDLKKILRATDGLGTEATRAGIIELL 535

Query: 496 TKRGYVIEDGS-LTVTDLGIGVTETLRKYCPEI-VEETLTRDLEDKLELIQDKKIKKEEV 553
            KRG++ + G  +  T+ G  +  +L    PE+     +T   E  L  I +K+ + ++ 
Sbjct: 536 FKRGFLEKKGRYIHSTEPGRALIHSL----PELAARPDMTAHWESVLTQISEKQCRYQDF 591

Query: 554 IQETKDKLTKILGEFR 569
           +Q     L +++ + R
Sbjct: 592 MQPLVGTLYQLIDQAR 607