Pairwise Alignments

Query, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2

Subject, 865 a.a., DNA topoisomerase I, bacterial from Enterobacter asburiae PDN3

 Score =  232 bits (592), Expect = 6e-65
 Identities = 231/826 (27%), Positives = 363/826 (43%), Gaps = 109/826 (13%)

Query: 4   LIICEKPNVAKKIAEALGKPKKKSHNSVPYYELERNGESIVVASAVGHLYTLQ------- 56
           L+I E P  AK I + LG                      VV S+VGH+  L        
Sbjct: 5   LVIVESPAKAKTINKYLGN-------------------DYVVKSSVGHIRDLPTSGSASK 45

Query: 57  ---EKTKTKFGDYPVYD-----INWV---PASTLDEKKYI----QKYIDALKKVSKDANK 101
              + T TK    P  D     +N +   P    D +  +    +K ++ LK++++ A+ 
Sbjct: 46  KSADSTSTKGAKKPKKDERSALVNRMGVNPWHNWDAQYEVLPGKEKVVNELKQLAEKADH 105

Query: 102 FYVATDWDIEGELIGYHALNFSCGQ-KNAHRLRFSSLTKKEILKAYENPNEIDFGLVDAG 160
            Y+ATD D EGE I +H      G  K   R+ F+ +TK  I +A+E P E++   V+A 
Sbjct: 106 IYLATDLDREGEAIAWHLREVIGGDDKRYSRVVFNEITKNAIRQAFEKPGELNIDRVNAQ 165

Query: 161 DSRHKIDWYFGINVSRALMQAVSSVKRWKTLSTGRVQGPALAFLVDKELEIRNFVPTPYW 220
            +R  +D   G  VS  L + ++     + LS GRVQ  A+  +V++E EI+ FVP  +W
Sbjct: 166 QARRFMDRVVGYMVSPLLWKKIA-----RGLSAGRVQSVAVRLVVEREREIKAFVPEEFW 220

Query: 221 VLEALLDND------LIAVHELEKFWDEEQANKAYEKVKGQKQATVSDVKKSMK--TIPP 272
            ++A +         L   H  +K +  E  ++    V   ++A    +++  K  +  P
Sbjct: 221 EVDANVTTPGGDALPLQVSHHNDKPFRPENRDQTMAAVALLEKARYKVLEREDKPTSSKP 280

Query: 273 NPPFDLGALQREAHNMFRFSPKKTQEVAQKLYEKGYCSYPRTSSQKLPDDKAYMDEVLKN 332
             PF    LQ+ A     +  KKT  +AQ+LYE GY +Y RT S  L  D   M     +
Sbjct: 281 GAPFITSTLQQAASTRLGYGVKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNMVRGYIS 340

Query: 333 LSKNKNYKPYIETILNENRKPISGKNDDPAHPAVHAVDVP--KEKLPD---DELKLYELI 387
            +  K Y P          +  S +N   AH A+   DV    E L D   D  KLY+LI
Sbjct: 341 DNFGKKYLP------ESANQYASKENSQEAHEAIRPSDVSVLAESLKDMEADAQKLYQLI 394

Query: 388 ARRTIALYWDNAKREYSKINLDINGETFKLSGSRTVEEGWHEIY-YYTKFDEVE-LPELK 445
            R+ +A     AK + + + +       K  G     +GW ++     K DE   LP + 
Sbjct: 395 WRQFVACQMTPAKYDSTTLTVGAGDFRLKARGRILRFDGWTKVMPALRKGDEDRTLPAVN 454

Query: 446 KNDVINVNNINFEAKETKPPKRYTMASIIKELEKRKLGTKATRADILEKLTKRGYV-IED 504
           K D +++ ++      TKPP R++ AS++KELEKR +G  +T A I+  +  RGYV +E+
Sbjct: 455 KGDELSLVDLVPAQHFTKPPARFSEASLVKELEKRGIGRPSTYASIISTIQDRGYVRVEN 514

Query: 505 GSLTVTDLGIGVTETLRKYCPEIVEETLTRDLEDKLELIQDKKIKKEEVIQETKDKLTKI 564
                  +G  VT+ L     E++    T  +ED L+ +   + + ++V+       T  
Sbjct: 515 RRFYAEKMGEIVTDRLEANFRELMNYDFTAQMEDSLDQVASHQAEWKKVLDSFFSDFTDQ 574

Query: 565 LGEFRLKEKEIGTELVDKLDSTNRSLQIIGKCKCGGDMIIIRTKGKKRFVGCSNY----- 619
           L E   K+ E G  L +++  T+        C   G  + IRT     F+GCS Y     
Sbjct: 575 L-EKAEKDPEEGGMLPNQMVLTSID------CPTCGRKMGIRTATTGVFLGCSGYALSPK 627

Query: 620 PDCEVTFPL-PQKGRIKVL------------NEVCEKCQNPVIGL-----DRIKIC-VNP 660
             C+ T  L P+   + VL               C+KC   +         ++ +C  NP
Sbjct: 628 ERCKTTINLVPENEVLNVLEGDDAETNALRAKRRCKKCGTAMDSYLIDPKRKLHVCGNNP 687

Query: 661 DCSTRISEEDKKEIEKAEKEEKICPKCGNKLLIKKGPYGVFRGCENYPKCKYTEKL--NG 718
            C     EE +  I+  +     C KCG+++ +K G +G +  C N  +CK T K+  NG
Sbjct: 688 TCDGYEIEEGEFRIKGYDGPIVECEKCGSEMHLKMGRFGKYMACTN-DECKNTRKILRNG 746

Query: 719 E----SNEKEIVGKCPKCGSDLY--KRKGRFGEFIGCSNYPKCRHT 758
           E      +   + + P   SD Y   R G  G F+  + +PK R T
Sbjct: 747 EVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGVFLAANTFPKSRET 792