Pairwise Alignments

Query, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2

Subject, 867 a.a., type I DNA topoisomerase from Dickeya dianthicola ME23

 Score =  232 bits (591), Expect = 8e-65
 Identities = 205/711 (28%), Positives = 324/711 (45%), Gaps = 77/711 (10%)

Query: 86  QKYIDALKKVSKDANKFYVATDWDIEGELIGYHALNFSCGQ-KNAHRLRFSSLTKKEILK 144
           +K +  LK ++++A+  Y+ATD D EGE I +H      G  K   R+ F+ +TK  I +
Sbjct: 92  EKVVSELKALAQNADHVYLATDLDREGEAIAWHLREIIGGDDKRFSRVVFNEITKNAIRQ 151

Query: 145 AYENPNEIDFGLVDAGDSRHKIDWYFGINVSRALMQAVSSVKRWKTLSTGRVQGPALAFL 204
           A+ENP E++   V+A  +R  +D   G  VS  L + ++     + LS GRVQ  A+  +
Sbjct: 152 AFENPGELNINRVNAQQARRFMDRVVGYMVSPLLWKKIA-----RGLSAGRVQSVAVRLV 206

Query: 205 VDKELEIRNFVPTPYWVLEALLDNDLIAVHELEKFWDEEQAN-KAYEKV-KGQKQATVSD 262
           V++E EI+ FVP  YW L A    DL+A  E+         N K +  V + Q QA VS 
Sbjct: 207 VEREREIKAFVPEEYWELHA----DLLANPEIALQMQVTHHNGKPFRPVNQAQTQAAVSL 262

Query: 263 VKKSMKTIP----------PNPPFDLGALQREAHNMFRFSPKKTQEVAQKLYEKGYCSYP 312
           ++K+   +           P  PF    LQ+ A     F  KKT  +AQ+LYE G+ +Y 
Sbjct: 263 LEKARYVVAEREDKPTSSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEAGHITYM 322

Query: 313 RTSSQKLPDDKAYMDEVLKNLSKNKNYKPYIETILNENRKPISGKNDDPAHPAVHAVDVP 372
           RT S  L  D   M     +    K Y P    +        S +N   AH A+   DV 
Sbjct: 323 RTDSTNLSQDALTMARDYIHDEFGKRYLPEAPNLYT------SKENSQEAHEAIRPSDVK 376

Query: 373 --KEKLPD---DELKLYELIARRTIALYWDNAKREYSKINLDINGETFKLSGSRTVEEGW 427
              ++L D   D  KLY+LI R+ +A     A+ + + + +       +  G     +GW
Sbjct: 377 VQADQLKDMEADAQKLYQLIWRQFVACQMMPAQYDSTTLVVSAGDYQLRAKGRTLRFDGW 436

Query: 428 HEIY-YYTKFDEVE-LPELKKNDVINVNNINFEAKETKPPKRYTMASIIKELEKRKLGTK 485
            ++     K DE   LP +     +++  ++     TKPP RY+ AS++KELEKR +G  
Sbjct: 437 TKVMPALRKGDEDRTLPAIDVGQSLSLEKLSPSQHFTKPPARYSEASLVKELEKRGIGRP 496

Query: 486 ATRADILEKLTKRGYV-IEDGSLTVTDLGIGVTETLRKYCPEIVEETLTRDLEDKLELIQ 544
           +T A I+  +  RGYV +E+       +G  VT+ L     E++    T  +E++L+L+ 
Sbjct: 497 STYAAIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEDNFRELMNYDFTARMENRLDLVA 556

Query: 545 DKKIKKEEVIQETKDKLTKILGEFRLKEKEIGTELVDKLDSTNRSLQIIGKCKCGGDMII 604
           + + + + V+ E   + +K L    L+  + G +        N+ +     C   G  + 
Sbjct: 557 NSQAEWKGVLDEFFAEFSKQLETAELEPNDGGMK-------PNQMVLTSIDCPTCGRKMG 609

Query: 605 IRTKGKKRFVGCSNYPDCEVTFPLPQKGRIKVLNEVCEKCQNPVIGLDRIKICVNPDCST 664
           IRT     F+GCS Y        L  K          E+C+  +  +   ++        
Sbjct: 610 IRTASTGVFLGCSGY-------ALSPK----------ERCKTTINLIPEAEV-------L 645

Query: 665 RISEEDKKEIEKAEKEEKICPKCGNKL---LIKKGPYGVFRGCENYPKCKYTEKLNGESN 721
            + E D+ E   A +  + C KCG  +   LI          C N P C   E   GE  
Sbjct: 646 NVLEGDEAE-TNALRARRRCSKCGTAMDSYLIDN--QRKLHVCGNNPSCDGYEIEQGEFR 702

Query: 722 EKEIVG---KCPKCGSDLYKRKGRFGEFIGCSNYPKCRHTEKIDKKKEDTP 769
            K   G   +C KC S+++ + GRFG+++ C+N   C +T KI +  E  P
Sbjct: 703 LKGYDGPVVECEKCSSEMHLKMGRFGKYMACTN-ESCGNTRKILRNGEVAP 752