Pairwise Alignments

Query, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2

Subject, 641 a.a., DNA topoisomerase III from Dickeya dianthicola ME23

 Score =  158 bits (399), Expect = 1e-42
 Identities = 157/620 (25%), Positives = 268/620 (43%), Gaps = 69/620 (11%)

Query: 4   LIICEKPNVAKKIAEALGKPKKKSHNSVPYYELERNGESIVVASAVGHLYTLQEK----- 58
           L I EKP++A+ IA+ L KP+++S   +        GE  VV   VGHL    +      
Sbjct: 3   LFIAEKPSLARAIADVLPKPQRRSDGFIAC------GEQDVVTWCVGHLLEQAQPDAYDA 56

Query: 59  --TKTKFGDYPVYDINWVPASTLDEKKYIQKYIDALKKVSKDANKFYVATDWDIEGELIG 116
              +    D P+    W+    L  +  + K ++ +KK+   A++   A D D EG+L+ 
Sbjct: 57  RYARWSLADLPIVPQKWL----LQPRPSVSKQLNVIKKLLTQADEIIHAGDPDREGQLLV 112

Query: 117 YHALNFSC----GQKNAHRLRFSSLTKKEILKAYEN--PNEIDFGLVDAGDSRHKIDWYF 170
              L +       +++  R   + L  + + +A      N     L  +  +R + DW +
Sbjct: 113 DEVLEYLALSEEKRQHVRRCLINDLNPQAVERAVSRMRENREFVPLCVSALARSRADWLY 172

Query: 171 GINVSRALMQAVSSVKRWKTLSTGRVQGPALAFLVDKELEIRNFVPTPYWVLEALL---- 226
           GIN++RA      +      LS GRVQ P L  +V ++ EI NFVP  Y+ ++A +    
Sbjct: 173 GINMTRAYTLLGRNAGYEGVLSVGRVQTPVLGLVVRRDEEIDNFVPRDYFEVKAHIVTPA 232

Query: 227 DNDLIAV----HELEKFWDEE-------QANKAYEKVKGQKQ-ATVSDVKKSMKTIPPNP 274
               +A+       E + DEE        A    +++ GQ    +  + K+  +T P   
Sbjct: 233 GERFVALWQPSESCEPYQDEEGRLLHRPLAEHVVKRIDGQPAWVSAYNDKRESETAP--L 290

Query: 275 PFDLGALQREAHNMFRFSPKKTQEVAQKLYE-KGYCSYPRTSSQKLPDDK-AYMDEVLKN 332
           P+ L ALQ EA   F  S ++  +V Q+LYE     +YPR+  + LP++  A    VL  
Sbjct: 291 PYSLSALQIEAAKRFGLSAQQVLDVCQRLYETHKLITYPRSDCRYLPEEHFAGRQAVLNA 350

Query: 333 LSKNKNYKPYIETILNENRKPI-SGKNDDPAHPAVHAVDVPKEKLPDDELKLYELIARRT 391
           ++ ++        +  E R         D  H  +      +  L + E ++Y LIAR+ 
Sbjct: 351 IAAHQPDLLAQPAVDPERRNRCWDDSKVDAHHAIIPTARSARTSLTESESQVYGLIARQY 410

Query: 392 IALYWDNAKREYSKINLDINGETFKLSGSRTVEEGWHEIYYYTKFDE----VELPELKKN 447
           +  +  +A      I+LDI G  F        E GW  +  + + DE      LP + K 
Sbjct: 411 LMQFCADAVFRKCVIDLDIAGGKFVAKARFLAEAGWRTLLGHKERDEENEGTPLPVVAKG 470

Query: 448 DVINVNNINFEAKETKPPKRYTMASIIKEL-----------------EKRKLGTKATRAD 490
           D +         ++T+PP+ +T A+++  +                 E   LGT+ATRA 
Sbjct: 471 DELLCERGEVVERQTQPPRHFTDATLLSAMTGIARFVQDKALKKILRETDGLGTEATRAG 530

Query: 491 ILEKLTKRGYVIEDGS-LTVTDLGIGVTETLRKYCPEIVEETLTRDLEDKLELIQDKKIK 549
           I+E L KR ++I+ G  +  T+ G  +   L    P      +T   E  L  I +K  +
Sbjct: 531 IIELLFKRAFLIKKGRYIHSTEAGKALIHALP---PMAAHPDMTAHWEATLTQISEKHCR 587

Query: 550 KEEVIQETKDKLTKILGEFR 569
            ++ +Q     L +++ + R
Sbjct: 588 YQDFMQPLTQSLHELIQQAR 607