Pairwise Alignments

Query, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2

Subject, 780 a.a., DNA topoisomerase III, bacteria and conjugative plasmid from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  188 bits (477), Expect = 1e-51
 Identities = 206/790 (26%), Positives = 343/790 (43%), Gaps = 89/790 (11%)

Query: 6   ICEKPNVAKKIAEALGKPKKKSHNSVPYYELERNGESIVVASAVGHLYTLQ--EKTKTKF 63
           I EKP+VA++IA+ +G   +K      Y+E    G    V    GH  +L   E     +
Sbjct: 5   IAEKPSVAREIAQVIGAKNRKDG----YFE----GNGYQVTWTFGHFCSLYPPEDYDPTW 56

Query: 64  GDYPVYDINWVPA---STLDEKKYIQKYIDALKKVSKDANKFYVATDWDIEGELIGYHAL 120
             + +Y +  +P    + +     ++K    ++ +   A       D   EGELI    L
Sbjct: 57  KRWDLYTLPMLPKRFETKIIPDNGVKKQFKIIRDLVNKAQVVINCGDAGQEGELIQRWVL 116

Query: 121 NFSCGQKNAHRLRFSSLTKKEILKAYEN--PNEIDFGLVDAGDSRHKIDWYFGINVSRAL 178
             +  Q    RL  SSLT + I   +EN  P E    L  AG SR   DW  G+N +R  
Sbjct: 117 KQANYQGAVQRLWISSLTTESIQAGFENLKPAEEFDNLYYAGSSRAIGDWLLGMNATRLY 176

Query: 179 MQAVSSVKRWKTLSTGRVQGPALAFLVDKELEIRNFVPTPYWVLEALLDNDLIAVHELE- 237
                  K+   LS GRVQ P LA LV++  EI  F P PYW L+    +     H  E 
Sbjct: 177 TLKYGGYKQ--VLSIGRVQTPTLAMLVNRHQEIEQFKPEPYWELQTTYRD--TTFHSTEG 232

Query: 238 KFWDEEQANKAYEKVKGQKQATVSDVKKSMKTIPPNPPFDLGALQREAHNMFRFSPKKTQ 297
           KF  +E       ++ G+     +  +K  K   P   FDL +LQ   +N F  +   T 
Sbjct: 233 KFLKKEDGEALLGQITGKDLFITAIDQKEGKEYAPK-LFDLTSLQVYCNNKFNLTADNTL 291

Query: 298 EVAQKLYEKGYCSYPRTSSQKLPDDK-AYMDEVLKNLSKNKNY-KPYIETILNENRKPIS 355
           +  Q+LYE    +YPR  +  LP+D    +  +LK L +  ++  P +   + ++ K  +
Sbjct: 292 KTVQRLYELKVVTYPRVDTTFLPNDMYPKISGILKGLGQYHSFTAPLLAKKIRKSPKVFN 351

Query: 356 GKNDDPAHPAVHAVDVPKEKLPDDELKLYELIARRTIALYWDNAKREYSKINLDINGETF 415
            K     H  +   +  +++L   E K+Y++I RR +A ++ + K   +++  +I   TF
Sbjct: 352 DKKVTDHHAIIPTGE--EKQLGHTEQKVYDIIVRRFLAAFYPDCKVAKTQVTGEIEQTTF 409

Query: 416 KLSGSRTVEEGWHEIYYY----------TKFDEVE--LPELKKNDVINVNNINFEAKETK 463
              G   +EEGW  ++            +K DE E  LP  +K +    ++   + K TK
Sbjct: 410 LAKGKEILEEGWRALFAKDNKKEKDDGDSKEDEEEGILPTFEKGE-HGPHHPTLKEKITK 468

Query: 464 PPKRYTMASIIKELE----------------KRKLGTKATRADILEKLTKRGYVIEDGSL 507
           PPK YT AS+++ +E                   +G  +TRA I+E L +R Y+     L
Sbjct: 469 PPKNYTEASLLRAMETAGKQVEDDELRDLMKANGIGRPSTRASIIETLFRRKYIERRKKL 528

Query: 508 TV-TDLGIGVTETLRKYCPEIVE-----ETLTRDLED----KLELIQDKKIKKEEVIQET 557
            V T++GI +  T++    +  E     E   +++E+     ++ I + K    E++ E 
Sbjct: 529 VVPTEMGIQLIGTIQNELLKSAELTGQWEKQLKEIEEGAFSAIQFIANMKKMVAELVSEV 588

Query: 558 KDKLTK--ILGEFRLKEKEIGTELVDKLDST---NRSLQIIGKCKCGGDMIIIRTKGKKR 612
           K +  K  +   F    ++  T    K  ++   ++ L  +   KCG   II   KGK  
Sbjct: 589 KQEHNKPRLASPFASDNQKKSTPSASKKKTSKAASKGLSEVTCPKCGQGNII---KGKTA 645

Query: 613 FVGCSNYPD-CEVTFPLPQKGRIKVLNEV--------CEKCQNPVIGLDRIKICVNPDCS 663
           + GCS + + C++  P+  KG+     +V          K +  ++  ++++  +    S
Sbjct: 646 Y-GCSQWKNGCDLRLPMKVKGKKLTDKQVQRLIEKGATTKLKGFLMDGEKVEGILKLTDS 704

Query: 664 TRISEEDKKEIEKAEKEEKI--CPKCGNKLLIK-KGPYGVFR---GCE-NYPKCKYTEKL 716
             I+ + K +        ++  CPKC    +IK K  YG      GC+  Y      E  
Sbjct: 705 FAINFDLKAQAPTKPTPPQMPPCPKCKKGTIIKGKTAYGCSEWKSGCDFRYAFKSIKEMA 764

Query: 717 NGESNEKEIV 726
           NG+   KE+V
Sbjct: 765 NGKPLTKELV 774