Pairwise Alignments

Query, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2

Subject, 782 a.a., type I DNA topoisomerase from Bacteroides stercoris CC31F

 Score =  167 bits (424), Expect = 2e-45
 Identities = 165/604 (27%), Positives = 261/604 (43%), Gaps = 90/604 (14%)

Query: 4   LIICEKPNVAKKIAEALGKPKKKSHNSVPYYELERNGESIVVASAVGHLYTLQEKTKTKF 63
           L+I E P  AK I + LGK  K                   V S+ GH+  L++K  +  
Sbjct: 5   LVIVESPAKAKTIEKFLGKDYK-------------------VLSSYGHIRDLKKKEFSID 45

Query: 64  GDYPVYDINWVPASTLDEKKYIQKYIDALKKVSKDANKFYVATDWDIEGELIGYHALN-F 122
            D        +P    D+KK +++    LK  +K+A   ++A+D D EGE I +H     
Sbjct: 46  IDKDFKPHYEIPG---DKKKVVEE----LKAEAKEAETVWLASDEDREGEAIAWHLYEVL 98

Query: 123 SCGQKNAHRLRFSSLTKKEILKAYENPNEIDFGLVDAGDSRHKIDWYFGINVSRALMQAV 182
               ++  R+ F  +T+  ILKA E P  ID  LVDA  +R  +D   G  +S  L + V
Sbjct: 99  KLQPEHTKRIVFHEITQSAILKAIEQPRNIDINLVDAQQARRILDRIVGFELSPVLWKKV 158

Query: 183 SSVKRWKTLSTGRVQGPALAFLVDKELEIRNFVPTPYWVLEALL---DNDLIAVH---EL 236
                   LS GRVQ  A+  +V++E EI+ F     + + A+    D D   V    EL
Sbjct: 159 KPA-----LSAGRVQSVAVRLIVEREREIQAFQSEASYRVTAVFLVPDADGKPVEMKAEL 213

Query: 237 EK-FWDEEQANKAYEKVKGQKQATVSDVKKSMKTIPPNPPFDLGALQREAHNMFRFSPKK 295
            +    + +A K  E  +     T+ D+        P  PF    LQ+EA     F+  +
Sbjct: 214 SRRIKTKAEAQKFLESCRSAS-FTIHDISTRPLKKSPAAPFTTSTLQQEAARKLGFTVAQ 272

Query: 296 TQEVAQKLYEKGYCSYPRTSSQKLPDDKAYMDEVLKNLSKNKNYKPYIETILNENRKPIS 355
           T  VAQ+LYE G  +Y RT S  L        E+  + SK        E  +        
Sbjct: 273 TMMVAQRLYESGKITYMRTDSVNL-------SELAVDNSKAVIADMMGERYVYPRHFATK 325

Query: 356 GKNDDPAHPAVHAVDVPKEKLPD--DELKLYELIARRTIALYWDNAKREYSKINLDINGE 413
            K    AH A+    +   K+     E KLY+LI +RTIA    +A+ E + +++ I+ E
Sbjct: 326 TKGAQEAHEAIRPTYMENAKIEGTPQERKLYDLIWKRTIASQMADAEVEKTTVSIGISNE 385

Query: 414 --TFKLSGSRTVEEGWHEIYYYTKFDEVE-------LPELKKNDVINVNNINFEAKETKP 464
             TF  +G     +G+  +Y  +  ++ E       LP LKK  V++  +I    + T+ 
Sbjct: 386 ADTFNATGEVVKFDGFLHVYRESIDEDTEQEDETRLLPPLKKGQVLHHQSIIATERFTQH 445

Query: 465 PKRYTMASIIKELEKRKLGTKATRADILEKLTKRGYV----------------------- 501
           P RYT AS++++LE+  +G  +T A  +  + +RGYV                       
Sbjct: 446 PPRYTEASLVRKLEELGIGRPSTYAPTISTIQQRGYVEKGEKSGEERSYNILSLQDSKIT 505

Query: 502 ---------IEDGSLTVTDLGIGVTETLRKYCPEIVEETLTRDLEDKLELIQDKKIKKEE 552
                     E   L  TD G  V + L +Y P I++   T  +E + + I + + K   
Sbjct: 506 DVTQTEITGAEKAKLMPTDTGTVVNDFLMEYFPNILDYNFTASVEKQFDEIAEGEKKWTA 565

Query: 553 VIQE 556
           ++++
Sbjct: 566 ILKD 569