Pairwise Alignments

Query, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2

Subject, 586 a.a., DNA topoisomerase from Bacteroides ovatus ATCC 8483

 Score =  191 bits (486), Expect = 8e-53
 Identities = 159/584 (27%), Positives = 266/584 (45%), Gaps = 53/584 (9%)

Query: 5   IICEKPNVAKKIAEALGKPKKKSHNSVPYYELERNGESIVVASAVGHLYTLQEKT----- 59
           I+ +KPNV K+IA  LG   +++            G   +V    G++ +L         
Sbjct: 4   ILTDKPNVGKEIARILGAQTRENGYMT--------GNGYMVTWTFGNMLSLAMPKDYGIE 55

Query: 60  KTKFGDYPVY-------------DINWVPASTLDEKKYIQKYIDALKKVSKDANKFYVAT 106
           + +  D+P+              D  WVP    D    +Q  +  ++KV    +    AT
Sbjct: 56  RPEREDFPLNPAPFKLMVKHVKTDTGWVP----DINAVLQ--LKVIEKVFATCDTIIAAT 109

Query: 107 DWDIEGELIGYHALNFSCGQKNAHRLRFSSLTKKEILKAYEN--PNEIDFGLVDAGDSRH 164
           D   EGE++  +   +    K   RL  SSLT + +L+   N     +   +  A DSR+
Sbjct: 110 DASREGEMVFRYLYQYLDCHKPYRRLWISSLTDEAVLEGMANLKAGSLFDPMFLAADSRN 169

Query: 165 KIDWYFGINVSRALMQAVSSVKRWKTLSTGRVQGPALAFLVDKELEIRNFVPTPYWVLEA 224
           K DW  G+N S A+ Q   +       S GRVQ P LA +  +  E  N + T  + +  
Sbjct: 170 KADWLLGMNASYAICQTTGTGNN----SLGRVQTPVLAAISSRYRERENHIATDTFPVFV 225

Query: 225 LL--DNDLIAVHELEKFWDEEQANKAYEKVKGQKQATVSDVKKSMKTIPPNPPFDLGALQ 282
            L  DN L  +   E+  D E A + Y   K   QA ++ V + +K I P   ++L  LQ
Sbjct: 226 SLYKDNILFKMRCTEELTDREAATRFYGDCKAAGQARITAVSRQVKEIEPPALYNLTELQ 285

Query: 283 REAHNMFRFSPKKTQEVAQKLYEKGYCSYPRTSSQKLPDD-KAYMDEVLKNLSKNKNYKP 341
           ++A   +  +  K+ E+ Q+LYEK   SYPRTSS+ L  D    +   ++ +   K ++P
Sbjct: 286 KDACRHYGMTAGKSLEIVQRLYEKKLISYPRTSSRFLSRDVYDRLPSTMEKILNRKEFRP 345

Query: 342 YIETI-LNENRKP--ISGKNDDPAHPAVHAVDVPKEKLPDDELKLYELIARRTIALYWDN 398
           Y+ T+ +N    P  +  +     H A+   ++  E L  +E++LY +I  R +  +   
Sbjct: 346 YVRTMGINIFDLPDRVVDEERVAEHHAIIITNMYPEALEREEMQLYLMIIGRMLEAFMPA 405

Query: 399 AKREYSKINLDINGETFKLSGSRTVEEGWHEIYYY------TKFDEVELPELKKNDVINV 452
            K EY+ ++       F+    R +E+GW  ++         ++  + +PELK  + + V
Sbjct: 406 CKVEYTTVDAICAARNFRCHTYRIIEKGWFGVFEREDEIAGQQYHPIPIPELKNGETVTV 465

Query: 453 NNINFEAKETKPPKRYTMASIIKELEKRKLGTKATRADILEKLTKRGYVIEDGSLTV-TD 511
              N   K+  P   YT A +I+ ++   LGT ATR  IL+ L  R YV   G   + T 
Sbjct: 466 TGCNLIHKKDLPVSAYTDAGLIEYMDTAGLGTVATRTGILQTLIDRKYVRYSGGYIIPTR 525

Query: 512 LGIGVTETLRKYCPEIVEETLTRDLEDKLELIQDKKIKKEEVIQ 555
            G+ + ET+R    +I +  LT   E +L  ++  K+ +EE ++
Sbjct: 526 KGLYIYETVRGM--KIADPALTSGWETQLAGMEQGKLTQEEFLE 567