Pairwise Alignments

Query, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2

Subject, 892 a.a., DNA topoisomerase I from Agrobacterium fabrum C58

 Score =  191 bits (484), Expect = 2e-52
 Identities = 193/693 (27%), Positives = 296/693 (42%), Gaps = 114/693 (16%)

Query: 4   LIICEKPNVAKKIAEALGKPKKKSHNSVPYYELERNGESIVVASAVGHLYTLQEKTKTKF 63
           +++ E P  AK I + LG   K                   V ++ GH+  L  K  +  
Sbjct: 3   VVVVESPAKAKTINKYLGSGYK-------------------VLASFGHVRDLPAKDGSVL 43

Query: 64  GDYPVYDINWVPASTLDEKKYIQKYIDALKKVSKDANKFYVATDWDIEGELIGYHALNFS 123
            D   ++++W   S     K ++   DA+K     ++  ++ATD D EGE I +H L+  
Sbjct: 44  PDQD-FEMSWEVDSA--SAKRMKDIADAVKS----SDGLFLATDPDREGEAISWHVLDLL 96

Query: 124 -----CGQKNAHRLRFSSLTKKEILKAYENPNEIDFGLVDAGDSRHKIDWYFGINVSRAL 178
                 G K   R+ F+++TKK +L A  NP +ID  LVDA  +R  +D+  G N+S  L
Sbjct: 97  KKKRVLGDKPVKRVVFNAITKKAVLDAMANPRDIDVPLVDAYLARRALDYLVGFNLSPVL 156

Query: 179 MQAVSSVKRWKTLSTGRVQGPALAFLVDKELEIRNFVPTPYWVLEALL--------DNDL 230
            + +   +     S GRVQ  AL  + D+E EI  FV   YW + ALL        +  L
Sbjct: 157 WRKLPGAR-----SAGRVQSVALRLVCDRESEIERFVSEEYWNISALLKTPRGDEFEAKL 211

Query: 231 IAVH----ELEKFWDEEQANKAYEKVKGQKQATVSDVKKSMKTIPPNPPFDLGALQREAH 286
           ++      +       E AN+    ++G      +   K +K   P PPF    LQ+ A 
Sbjct: 212 VSADGKRLQSRGIKTGEDANRLKALLEGATYVVDTVEAKPVKR-NPGPPFTTSTLQQAAS 270

Query: 287 NMFRFSPKKTQEVAQKLYEK--------GYCSYPRTSSQKLPDDKAYMDEVLKNLSKNKN 338
           +   F   +T +VAQKLYE         G  +Y RT   ++  +      +       + 
Sbjct: 271 SRMGFGASRTMQVAQKLYEGIDIGGETVGLITYMRTDGVQIAPEAIDAARLAIGEQFGER 330

Query: 339 YKPYIETILNENRKPISGKNDDPAHPAVHAVDVP------KEKLPDDELKLYELIARRTI 392
           Y P      +        KN   AH A+   D        K  L  D+L+LY+LI +R I
Sbjct: 331 YVPEKARFYSTK-----AKNAQEAHEAIRPTDFTRTPDQVKRYLDADQLRLYDLIWKRGI 385

Query: 393 ALYWDNAKREYSKINL--DINGETFKLS--GSRTVEEGWHEIYYYTKFD---------EV 439
           A    +A+ E + + +  D NGE   L   GS    +G+   Y   K D         E 
Sbjct: 386 ASQMASAEIERTTVEILADKNGEKAGLRAVGSVIRFDGFIAAYTDQKEDGEQSDDGDDEG 445

Query: 440 ELPELKKNDVINVNNINFEAKETKPPKRYTMASIIKELEKRKLGTKATRADILEKLTKRG 499
            LP++   + +    IN     T+PP RY+ AS+IK++E+  +G  +T A  L+ L+ R 
Sbjct: 446 RLPQINARENLAKQKINASQHFTEPPPRYSEASLIKKMEELGIGRPSTYAATLKTLSDRE 505

Query: 500 Y-VIEDGSLTVTDLGIGVTETLRKYCPEIVEETLTRDLEDKLELIQDKKIKKEEV----- 553
           Y VI+   L     G  VT  L  +  + VE   T  LE+KL+ I   ++  ++V     
Sbjct: 506 YIVIDKRKLIPHSRGRLVTAFLESFFTKYVEYDFTAALEEKLDRISAGELDWKQVLRDFW 565

Query: 554 ------IQETK--------DKLTKILGEFRLKEKEIGTELVDKLDSTNRSLQIIGKCKCG 599
                 I++TK        D L ++L      ++E G        S  R  Q+     CG
Sbjct: 566 KDFFAQIEDTKELRVTNVLDALNEVLAPLVFPKREDG--------SDPRICQV-----CG 612

Query: 600 GDMIIIRTKGKKRFVGCSNYPDCEVTFPLPQKG 632
              + ++      FVGCSNYP+C  T  L   G
Sbjct: 613 TGNLSLKLGKYGAFVGCSNYPECNYTRQLTSDG 645



 Score = 42.0 bits (97), Expect = 2e-07
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 729 CPKCGS-DLYKRKGRFGEFIGCSNYPKCRHTEKIDKKKEDTPGETKAETK 777
           C  CG+ +L  + G++G F+GCSNYP+C +T ++     +       E K
Sbjct: 608 CQVCGTGNLSLKLGKYGAFVGCSNYPECNYTRQLTSDGAEADAAASNEPK 657