Pairwise Alignments

Query, 278 a.a., shikimate dehydrogenase from Methanococcus maripaludis S2

Subject, 282 a.a., shikimate dehydrogenase from Pseudomonas simiae WCS417

 Score =  127 bits (319), Expect = 3e-34
 Identities = 82/268 (30%), Positives = 139/268 (51%), Gaps = 13/268 (4%)

Query: 8   LVGLIGHPVDHSFSPIMHNAAIKDLKINYRYFAFDVSEENLKD-----VVAGAKAFNFRG 62
           L GLIG  +  S +P +H        + Y Y   D+   +L       ++  A+  +F G
Sbjct: 6   LAGLIGAGIQASRTPALHEQEGDARGLRYLYRLIDLEPLHLDTNALPHLLDAAELMHFTG 65

Query: 63  FNITIPHKMNIMKYLDEIDCDAEAIGAVNTVKIENGKAIGYNTDGIGVKKALEEKTGILI 122
            NIT P K  I+  LDE+  +A  IGAVNTV  ++GK IG+NTD +G  +        + 
Sbjct: 66  LNITYPCKQAILPLLDELSDEARGIGAVNTVVFKDGKRIGHNTDCLGFAEGFRRNLKDVA 125

Query: 123 NKNILIIGSGGASRAVSFELAKD--NNLTIVNRNIEKAENLSKEISRKLKKENPLNYGGL 180
            + ++ +G+GGA  AV+  L  +    L+I + +I +A +L   ++++           L
Sbjct: 126 RQRVVQMGAGGAGAAVAHALLAEGVQQLSIFDVDISRARDLVDNLAQRFGTGRAQVGSQL 185

Query: 181 DINIENFDIIINTTPVGM--YPHTEVEPVIPLNNIKKDAVVMDLIYNPLEPVFLKEAKKY 238
           +  +   D ++NTTP+GM   P T V    P   ++ +  V +++Y PLE   L++A+  
Sbjct: 186 ENAMAEADGLVNTTPMGMAKLPGTPV----PATLLRTELWVAEIVYFPLETELLRDARAL 241

Query: 239 GAKTINGIGMLVYQGAVSFEIWTGIKPD 266
           G +T++G  M V+Q   +FE+++G  PD
Sbjct: 242 GCRTLDGGNMAVFQAVKAFELFSGEVPD 269