Pairwise Alignments

Query, 278 a.a., shikimate dehydrogenase from Methanococcus maripaludis S2

Subject, 272 a.a., Shikimate dehydrogenase-like protein from Pseudomonas sp. DMC3

 Score =  100 bits (248), Expect = 4e-26
 Identities = 80/272 (29%), Positives = 126/272 (46%), Gaps = 26/272 (9%)

Query: 3   NSKTKL-VGLIGHPVDHSFSPIMHNAAIKDLKINYRYFAFDVSEENLKDVVAGAKAFNFR 61
           N  T+L + L G P   +F    HN   + L +N+ Y AF  S ++L   V G +A   R
Sbjct: 6   NKDTQLCMSLSGRP--GNFGLRFHNHLYEQLGLNFYYKAF--SSQDLTGAVGGIRALGIR 61

Query: 62  GFNITIPHKMNIMKYLDEIDCDAEAIGAVNTVKIENGKAIGYNTDGIGVKKALEEKTGIL 121
           G  +++P K   +  +DE+D  A AI ++NT+    G    YNTD I V + LE    + 
Sbjct: 62  GCGVSMPFKEACIALVDELDASAAAIQSINTIVNTGGHLKAYNTDYIAVAQLLESH-AVP 120

Query: 122 INKNILIIGSGGASRAVSFELAKD--NNLTIVNRNIEKAENLSKEISRKLKKENPLNYGG 179
            +    + GSGG ++AV+  L      N  IV RN      L+  +  + + E       
Sbjct: 121 KDSTFALRGSGGMAKAVASALRDGGYQNGLIVARNERAGRALADSLGYRWQAE------- 173

Query: 180 LDINIENFDIIINTTPVGMYPHTEV-----EPVIPLNNIKKDAVVMDLIYNPLEPVFLKE 234
             +  E   ++IN TPVGM    E      EP +    IK    V D++  P E   +  
Sbjct: 174 --LGDERPQMLINVTPVGMDGGPEAGQLAFEPEV----IKAAETVFDVVAIPSETPLIVR 227

Query: 235 AKKYGAKTINGIGMLVYQGAVSFEIWTGIKPD 266
           A+  G + I G+ ++  Q    F ++TG++P+
Sbjct: 228 ARAEGKRVITGLEVIAIQALEQFVLYTGVRPN 259