Pairwise Alignments

Query, 467 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 541 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  116 bits (290), Expect = 2e-30
 Identities = 79/284 (27%), Positives = 148/284 (52%), Gaps = 17/284 (5%)

Query: 176 KAKEDLVRAEETSEQVADAASQVATAAADQSAK-LQDVSDQLEATSEITSAVTDAADDTV 234
           K ++ L R   ++ Q+A AA ++  A  D+SA+ L   ++++E  +   + +T A ++  
Sbjct: 258 KLRDTLQRIAGSATQLASAAEEL-NAVTDESARGLTQQNNEIEQAATAVNEMTSAVEEVA 316

Query: 235 TAAIEIEENSEMGVKKVENAIETMQSITNVIENLGKAIQ-------ELGNESKKINEVTV 287
             A+   E S        +  + +Q   + IE +   +Q       +L NES+ I +V  
Sbjct: 317 RNAVSTSEASRNATTSAGDGRDLVQETVSAIERMSGDVQATATLIGDLANESRDIGKVLD 376

Query: 288 LIKDVAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINRTINGVNR 347
           +I+ +A+QT LLALNA+IEAARAG+AG+GFAVVA E+++LA   ++S  +I R I  +  
Sbjct: 377 VIRGLADQTNLLALNAAIEAARAGEAGRGFAVVADEVRALAHRTQQSTSEIERMIGSIQA 436

Query: 348 KVEATIDLGISGKDEVDKGVIAIDEVNGAFLKIKESVETTSEKINS----IKVNAERAVN 403
             E  +D   S ++  ++    ++   GA + + +++ T   +IN     I   AE    
Sbjct: 437 GTEHAVD---SMRNSTERAESTLNIAKGAGMSL-DTINTAIVEINERNLVIASAAEEQAQ 492

Query: 404 NVETALKDSQDIASISEEFAATAEELTASAEEQSRIMNEIDDAI 447
                 ++  +I  +S + A  A + +A++ E SR+  +++  +
Sbjct: 493 VAREVDRNLVNIRDLSVQSATGASQTSAASSELSRLAVDLNGMV 536



 Score = 30.0 bits (66), Expect = 2e-04
 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 15/74 (20%)

Query: 401 AVNNVETALKDS-QDIASISEEFAATAEELTASAEEQSR--------------IMNEIDD 445
           A+  ++  L+D+ Q IA  + + A+ AEEL A  +E +R               +NE+  
Sbjct: 251 AMAKMQDKLRDTLQRIAGSATQLASAAEELNAVTDESARGLTQQNNEIEQAATAVNEMTS 310

Query: 446 AIEEITKSSEQISK 459
           A+EE+ +++   S+
Sbjct: 311 AVEEVARNAVSTSE 324