Pairwise Alignments

Query, 467 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 541 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  115 bits (287), Expect = 5e-30
 Identities = 85/319 (26%), Positives = 160/319 (50%), Gaps = 18/319 (5%)

Query: 144 ALQVTTNNAIVNVSTMVNDLKKQIEYLNAELLKAKEDL-VRAEETSEQVADAASQVATAA 202
           A++V    A  N+S  + D  K      A LL A   +     +T + +A +A+Q+A+AA
Sbjct: 221 AVEVAETIAGGNLSKAIEDDGKDEP---ARLLGALATMQANLRQTIQHIAGSATQLASAA 277

Query: 203 ADQSAKLQDVSDQLE-----------ATSEITSAVTDAADDTVT---AAIEIEENSEMGV 248
            + SA  ++ S  L+           A +E+T+AV + A + V+   A+ +  + +  G 
Sbjct: 278 EELSAVTEEASKGLQQQNNEIDQAATAVNEMTAAVEEVARNAVSTSEASSQSNQAAREGR 337

Query: 249 KKVENAIETMQSITNVIENLGKAIQELGNESKKINEVTVLIKDVAEQTGLLALNASIEAA 308
            +V   +  +Q++T  ++N    I+ L  + + I +V  +I+ +AEQT LLALNA+IEAA
Sbjct: 338 DRVVETVGAIQTMTQDVQNTAAMIEGLATQGRDIGKVLDVIRAIAEQTNLLALNAAIEAA 397

Query: 309 RAGDAGKGFAVVASEIKSLAEEIKKSVEDINRTINGVNRKVEATIDLGISGKDEVDKGVI 368
           RAG+AG+GFAVVA E+++LA    +S ++I + + G+       +             + 
Sbjct: 398 RAGEAGRGFAVVADEVRALAHRTAQSTQEIEKMVAGIQNGTGEAVQSMQQSNQRTQTTLE 457

Query: 369 AIDEVNGAFLKIKESVETTSEKINSIKVNAERAVNNVETALKDSQDIASISEEFAATAEE 428
                  A  +I +S+   +E+   I   +E          ++  +I  ++ + AA A +
Sbjct: 458 MARAAGVALEQITQSISLINERNLVIASASEEQAQVSREVDRNLVNIRDLATQSAAGANQ 517

Query: 429 LTASAEEQSRIMNEIDDAI 447
            +A++ E SR+  +++  +
Sbjct: 518 TSAASHELSRLAVDLNGMV 536



 Score = 36.2 bits (82), Expect = 3e-06
 Identities = 61/300 (20%), Positives = 119/300 (39%), Gaps = 44/300 (14%)

Query: 158 TMVNDLKKQIEYLNAELLKAKEDLVRA------EETSEQVADAASQ-VATAAADQSAKLQ 210
           T+ N LK Q + L A   + K D +RA      ++ ++Q+ +  ++ +A   AD  AK  
Sbjct: 121 TLDNYLKAQADML-ALSKQGKVDEMRALINSRIKDGTDQMGEQLNKLIAINVAD--AKTA 177

Query: 211 DVSDQLEATSEITSAVTDAADDTVTAAIEIEENSEMGVKKVENAIETMQSITNVIENLGK 270
           D          IT  +  +    +   +     +   V  +  A+E  ++I     NL K
Sbjct: 178 DTDAGQSYDGAITGVIAVSVAAALLTVLLAWLLTRSIVTPLRKAVEVAETIAG--GNLSK 235

Query: 271 AIQELGNESKKINEVTVLIKDVAEQTGLLA-LNASIEAARAGDAGKGFAVVASEIKSLAE 329
           AI++ G +            + A   G LA + A++       AG      A+++ S AE
Sbjct: 236 AIEDDGKD------------EPARLLGALATMQANLRQTIQHIAGS-----ATQLASAAE 278

Query: 330 EIKKSVEDINRTINGVNRKVEATIDLGISGKDEVDKGVIAIDEVNGAFLKIKESVETTSE 389
           E+    E+ ++ +   N              +E+D+   A++E+  A  ++  +  +TSE
Sbjct: 279 ELSAVTEEASKGLQQQN--------------NEIDQAATAVNEMTAAVEEVARNAVSTSE 324

Query: 390 KINSIKVNAERAVNNVETALKDSQDIASISEEFAATAEELTASAEEQSRIMNEIDDAIEE 449
             +     A    + V   +   Q +    +  AA  E L     +  ++++ I    E+
Sbjct: 325 ASSQSNQAAREGRDRVVETVGAIQTMTQDVQNTAAMIEGLATQGRDIGKVLDVIRAIAEQ 384



 Score = 32.3 bits (72), Expect = 4e-05
 Identities = 48/229 (20%), Positives = 99/229 (43%), Gaps = 52/229 (22%)

Query: 265 IENLGKAIQELGNESK--KINEVTVLI----KDVAEQTG-----LLALNASIEAARAGDA 313
           ++N  KA  ++   SK  K++E+  LI    KD  +Q G     L+A+N +       DA
Sbjct: 122 LDNYLKAQADMLALSKQGKVDEMRALINSRIKDGTDQMGEQLNKLIAINVADAKTADTDA 181

Query: 314 GKGF-----AVVASEI--------------KSLAEEIKKSVEDINRTINGVNRKVEATID 354
           G+ +      V+A  +              +S+   ++K+VE +  TI G N       D
Sbjct: 182 GQSYDGAITGVIAVSVAAALLTVLLAWLLTRSIVTPLRKAVE-VAETIAGGNLSKAIEDD 240

Query: 355 LGISGKDEVDKGVIAIDEVNGAFLKIKESVETTSEKINSIKVNAERAVNNVETALKDSQD 414
               GKDE  +       + GA   ++ ++  T + I         A          +++
Sbjct: 241 ----GKDEPAR-------LLGALATMQANLRQTIQHIAGSATQLASA----------AEE 279

Query: 415 IASISEEFAATAEELTASAEEQSRIMNEIDDAIEEITKSSEQISKDVSK 463
           +++++EE +   ++     ++ +  +NE+  A+EE+ +++   S+  S+
Sbjct: 280 LSAVTEEASKGLQQQNNEIDQAATAVNEMTAAVEEVARNAVSTSEASSQ 328