Pairwise Alignments

Query, 467 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 541 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  114 bits (284), Expect = 1e-29
 Identities = 77/288 (26%), Positives = 160/288 (55%), Gaps = 29/288 (10%)

Query: 178 KEDLVRAEETSEQVADAASQVATAAADQSAKLQDVSDQLE----ATSEITSAVTDAADDT 233
           ++ + R  E+S Q+A A+ +++    D +  L   S ++E    A +++T+AV + A + 
Sbjct: 260 RDTIRRISESSNQLASASEELSCVTEDATRGLHQQSQEIEQAATAVNQMTAAVEEVASNA 319

Query: 234 VT---AAIEIEENSEMGVKKVENAIETMQSI-TNVIENLGKAIQELGNESKKINEVTVLI 289
           V    A+ E +  ++ G ++V+  + +++++ T+V +N+ + +++L  +   I++V  +I
Sbjct: 320 VATSQASRESDRIAQRGREQVQQTVVSIEALATDVTDNVTQ-VEDLAQKVYGISKVLDVI 378

Query: 290 KDVAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINRTINGVNRKV 349
           + +AEQT LLALNA+IEAARAGDAG+GFAVVA E+++LA   ++S ++I + I+G+ +  
Sbjct: 379 RSIAEQTNLLALNAAIEAARAGDAGRGFAVVADEVRALAHRTQQSTQEIEQMISGIQQGT 438

Query: 350 EATID-------LGISGKDEVDKGVIAIDEVNGAFLKIKES---VETTSEKINSIKVNAE 399
           +  +           S  D       A++E+  AF  I E    + + SE+  ++    +
Sbjct: 439 DQAVSSMQQSNTRARSTLDIAKSAGTALEEIASAFTLINERNLVIASASEQQAAVAREVD 498

Query: 400 RAVNNVETALKDSQDIASISEEFAATAEELTASAEEQSRIMNEIDDAI 447
           R + N          I  ++ + +  A + +A++ + SR+  +++  +
Sbjct: 499 RNLMN----------IRDLAHQTSTGANQTSAASHDLSRLAVDLNTLV 536



 Score = 28.9 bits (63), Expect = 4e-04
 Identities = 47/284 (16%), Positives = 114/284 (40%), Gaps = 30/284 (10%)

Query: 178 KEDLVRAEETSEQVA--DAASQVATAAADQSAKLQDVSDQLEAT-SEITSAVTDAADDTV 234
           K +  R  E  EQV     A+Q+  A    + ++  ++D++ AT  E+ +    +A+   
Sbjct: 119 KAEEARYLERQEQVVTLSKANQLEDAIRVVNGEMNQLADEMAATLRELVTLNKTSANQAA 178

Query: 235 TAAIEIEENSEMGVKKVENAIETMQSITNVIENLGKAIQELGNESKKINEVTVLIKDVA- 293
           + A  +   S + V  +         +   +  +G A+    +    + +   + + VA 
Sbjct: 179 SLAQSVFSQSRIWVIGM--------IVLTALVTIGLAVLLTRSIVLPLAQSLKVAQGVAS 230

Query: 294 -EQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINRTIN---GVNRKV 349
            + TG +++    E AR   A          +KS+ E ++ ++  I+ + N     + ++
Sbjct: 231 GDLTGEISVCGRDEPARLQQA----------LKSMQENLRDTIRRISESSNQLASASEEL 280

Query: 350 EATIDLGISG----KDEVDKGVIAIDEVNGAFLKIKESVETTSEKINSIKVNAERAVNNV 405
               +    G      E+++   A++++  A  ++  +   TS+        A+R    V
Sbjct: 281 SCVTEDATRGLHQQSQEIEQAATAVNQMTAAVEEVASNAVATSQASRESDRIAQRGREQV 340

Query: 406 ETALKDSQDIASISEEFAATAEELTASAEEQSRIMNEIDDAIEE 449
           +  +   + +A+   +     E+L       S++++ I    E+
Sbjct: 341 QQTVVSIEALATDVTDNVTQVEDLAQKVYGISKVLDVIRSIAEQ 384