Pairwise Alignments

Query, 467 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 768 a.a., twitching motility protein PilJ from Variovorax sp. SCN45

 Score =  134 bits (337), Expect = 1e-35
 Identities = 98/431 (22%), Positives = 206/431 (47%), Gaps = 57/431 (13%)

Query: 38  ILFVVFIVSIVISTAIGYVILKKTCLNKVDNFLHSSSKITGKEYEHCDEEMFKTVISDFE 97
           +LFV+ + ++ ++ AIG+V +++                 G+E         +  +++ E
Sbjct: 390 LLFVLSLAALALAGAIGFVQVRE-----------------GRE---------RAAVAERE 423

Query: 98  KLKKDENSLKTYKKDVSNTFSELHTI--FKSLEQGDFTIRAN-TDRKYNALQVTTNNAIV 154
           +L  ++ S +  + + +N  + L  +   +++ +GD T  A  T+    A+  + N  + 
Sbjct: 424 RLAAEQASEEAGRVNNANQAAILRLMNELQTVAEGDLTQEATVTEDITGAIADSVNYTVE 483

Query: 155 NVSTMVNDLKKQIEYLNAELLKAKEDLVRAEETSEQVADAASQVATAAADQSAKLQDVSD 214
            +  +V +++                  R  +T+ QV   ++++  A+ +Q  ++++   
Sbjct: 484 ELRLLVGNVQNTA--------------TRVAQTTSQVESTSTELLAASTEQLREIRETGQ 529

Query: 215 QLEATSEITSAVTDAADDTVTAAIEIEENSEMGVKKVENAIETMQSITNVIENLGKAIQE 274
            +   +E  + V+  A ++ T A +  + +  G++ V+NAI  M SI + I+   K I+ 
Sbjct: 530 SVLTMAERINGVSSQAQESATVARQSLQAASSGLQAVQNAIGGMNSIRDQIQETSKRIKR 589

Query: 275 LGNESKKINEVTVLIKDVAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKS 334
           LG  S++I E+T LI D+ EQT +LALNA+I+AA AG+AG+GF+VVA E++ LAE    +
Sbjct: 590 LGESSQEIGEITELISDITEQTNVLALNAAIQAASAGEAGRGFSVVAEEVQRLAERSADA 649

Query: 335 VEDINRTINGVNRKVEATIDLGISGKDEVDKGVIAIDEVNGAFLKIKESVETTSEKINSI 394
              I+  +  +    +  +         V +G    D    A  +I       ++ I  I
Sbjct: 650 TRQISALVKAIQTDTQDAVGAMERSTQGVVEGAKLSDNAGTALSEIDRVSRRLADLIEQI 709

Query: 395 KVNAERAVNNVETALKDSQDIASISEEFAATAEELTASAEEQSRIMNEIDDAIEEITKSS 454
             +A R  ++      + Q I +++E+   T E    +A++           + E+++ +
Sbjct: 710 SQSASREADSANVVAANIQHIFAVTEQ---TGEGTRTTAQQ-----------VRELSQMA 755

Query: 455 EQISKDVSKFK 465
           E++ + V++FK
Sbjct: 756 EELRRSVARFK 766



 Score = 37.0 bits (84), Expect = 2e-06
 Identities = 45/266 (16%), Positives = 99/266 (37%), Gaps = 14/266 (5%)

Query: 193 DAASQVATAAADQSAKLQDVSDQLEATSEITSAVTDAADDTVTAAIEIEENSEMGVKKVE 252
           +A + + T +      L D+ D+L A + + +           AA+ +     +G  +V 
Sbjct: 354 EAQASILTDSEPLRKSLGDLQDKLSARTGLGAGTIVLLFVLSLAALALA--GAIGFVQVR 411

Query: 253 NAIETMQSITNVIENLGKAIQELGNESKKINEVTVLIKDVAEQTGLLALNASIEAARAGD 312
              E       V E    A ++   E+ ++N         A Q  +L L   ++    GD
Sbjct: 412 EGRERAA----VAERERLAAEQASEEAGRVNN--------ANQAAILRLMNELQTVAEGD 459

Query: 313 AGKGFAVVASEIKSLAEEIKKSVEDINRTINGVNRKVEATIDLGISGKDEVDKGVIAIDE 372
             +   V      ++A+ +  +VE++   +  V              +    + + A  E
Sbjct: 460 LTQEATVTEDITGAIADSVNYTVEELRLLVGNVQNTATRVAQTTSQVESTSTELLAASTE 519

Query: 373 VNGAFLKIKESVETTSEKINSIKVNAERAVNNVETALKDSQDIASISEEFAATAEELTAS 432
                 +  +SV T +E+IN +   A+ +      +L+ +       +        +   
Sbjct: 520 QLREIRETGQSVLTMAERINGVSSQAQESATVARQSLQAASSGLQAVQNAIGGMNSIRDQ 579

Query: 433 AEEQSRIMNEIDDAIEEITKSSEQIS 458
            +E S+ +  + ++ +EI + +E IS
Sbjct: 580 IQETSKRIKRLGESSQEIGEITELIS 605