Pairwise Alignments

Query, 467 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 569 a.a., methyl-accepting chemotaxis protein from Magnetospirillum magneticum AMB-1

 Score =  120 bits (302), Expect = 9e-32
 Identities = 90/282 (31%), Positives = 140/282 (49%), Gaps = 29/282 (10%)

Query: 183 RAEETSEQVADAASQVATAAADQSAKLQDVSDQLEATSEITSAVTDAADDTVTAAIEIEE 242
           R  E +  V+D A ++  +A+   AK Q V+   E +      V  AA++   +  +I  
Sbjct: 307 RVGEHTGAVSDRADEMQVSASRVDAKAQSVAAAAEQSLANAQTVAAAAEELTASIGQISS 366

Query: 243 NSEMGVKKVENAIETMQSITNVIENLGKAIQELGNESKKINEVTVLIKDVAEQTGLLALN 302
                 +    A+ T     + I  L +A+  +G       +V  LI D+A QT LLALN
Sbjct: 367 QIGHSAQVTRQAVSTAGRAQDTIGELTRAVARIG-------DVAALIADIASQTNLLALN 419

Query: 303 ASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINRTINGVNRKVEATIDLGISGKDE 362
           A+IEAARAGDAGKGFAVVA+E+K+LA +  KS E+INR +  +              +  
Sbjct: 420 ATIEAARAGDAGKGFAVVANEVKNLANQTSKSTEEINRQVAEI--------------RSV 465

Query: 363 VDKGVIAIDEVNGAFLKIKESVETTSEKINSI-KVNAERAVNNVET---ALKDSQDIASI 418
            D  V+A+ +V GA  +I+   ET ++ +    +   E A N V+T   A + S +I  +
Sbjct: 466 TDNTVVAVQDVIGAITEIEHIGETIAQAVGQQGEATQEIARNIVQTTAAAQEVSSNIGEV 525

Query: 419 SEEFAATAEELTASAEEQSRIMNEIDDAIEEITKSSEQISKD 460
           S+E A T E   A   E +R   E+  +I ++ +   Q+  D
Sbjct: 526 SQEAANTGEH-AARVREMAR---EVSSSIADLQQVLVQVVHD 563



 Score = 47.4 bits (111), Expect = 1e-09
 Identities = 42/190 (22%), Positives = 79/190 (41%), Gaps = 31/190 (16%)

Query: 153 IVNVSTMVNDLKKQIEYLNAELLKAKEDLVRAEETSEQVADAASQVATAAADQSAKLQDV 212
           I +V+ ++ D+  Q   L    L A  +  RA +  +  A  A++V   A   S   +++
Sbjct: 399 IGDVAALIADIASQTNLL---ALNATIEAARAGDAGKGFAVVANEVKNLANQTSKSTEEI 455

Query: 213 SDQLEATSEITSAVTDAADDTVTAAIEIEENSEMGVKKVENAIETMQSITNVIENLGKAI 272
           + Q+     +T     A  D + A  EIE   E              +I   +   G+A 
Sbjct: 456 NRQVAEIRSVTDNTVVAVQDVIGAITEIEHIGE--------------TIAQAVGQQGEAT 501

Query: 273 QELGNESKKINEVTVLIKDVAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIK 332
           QE+   ++ I + T   ++V+   G      S EAA  G+        A+ ++ +A E+ 
Sbjct: 502 QEI---ARNIVQTTAAAQEVSSNIG----EVSQEAANTGEH-------AARVREMAREVS 547

Query: 333 KSVEDINRTI 342
            S+ D+ + +
Sbjct: 548 SSIADLQQVL 557



 Score = 33.5 bits (75), Expect = 2e-05
 Identities = 64/304 (21%), Positives = 116/304 (38%), Gaps = 38/304 (12%)

Query: 193 DAASQVATAAADQSAKLQDVSDQLEATSEITSAVTDAADDTVTAAIEIEENSEMGVKKVE 252
           +AA  + TAAA  +A  Q   D  EA  +    VT A          +   S  G   + 
Sbjct: 169 EAAQGLITAAAGNAA--QATRDTAEAAGQRFWMVTAALMLVFVGISLLVVKSITG--PLM 224

Query: 253 NAIETMQSITNVIENLGKAIQELGNESKKINEVTVLIKDVA--------EQTGLLA---- 300
           + ++ M+SI+     +     E G+E   +     + KD A        EQ G+ A    
Sbjct: 225 HQVQAMRSISKGHLEVPVDGTEAGDEVGSMARALKVFKDNALETERLRAEQAGMAATAER 284

Query: 301 --------LNASIE---AARAGDAGKGFAVVASEIKSLAEEIKKSVEDINRTINGVNRKV 349
                   + A++E   AA  G  G+    V+      A+E++ S   ++     V    
Sbjct: 285 AKRQALDTMAATVEREAAAAVGRVGEHTGAVSDR----ADEMQVSASRVDAKAQSVAAAA 340

Query: 350 E---ATIDLGISGKDEVDKGVIAIDEVNGAFLKIKESVETTSEKINSIKVNAERAVNNVE 406
           E   A      +  +E+   +  I    G   ++     +T+ +         RAV  + 
Sbjct: 341 EQSLANAQTVAAAAEELTASIGQISSQIGHSAQVTRQAVSTAGRAQDTIGELTRAVARIG 400

Query: 407 TALKDSQDIASISEEFAATAEELTASAEEQSR----IMNEIDDAIEEITKSSEQISKDVS 462
                  DIAS +   A  A    A A +  +    + NE+ +   + +KS+E+I++ V+
Sbjct: 401 DVAALIADIASQTNLLALNATIEAARAGDAGKGFAVVANEVKNLANQTSKSTEEINRQVA 460

Query: 463 KFKT 466
           + ++
Sbjct: 461 EIRS 464