Pairwise Alignments

Query, 467 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 807 a.a., HAMP domain-containing protein from Magnetospirillum magneticum AMB-1

 Score =  117 bits (293), Expect = 1e-30
 Identities = 97/299 (32%), Positives = 149/299 (49%), Gaps = 38/299 (12%)

Query: 172 AELLKAKED----LVRAEETSEQVADAASQVATAAADQSAKLQDVSDQLEATSE------ 221
           A+ +KA+ D    L    +T E+      Q  T+AA +   LQ  S Q+  T+       
Sbjct: 378 AQKVKAEADRKAALHHMADTFEESVGKVVQTVTSAATE---LQGASSQMAGTAHETSAQA 434

Query: 222 --ITSAVTDAADDTVTAAIEIEENSEMGVKKVENAIETMQSITN----VIENLGKAIQEL 275
             + SA T A+ +  T A   EE +   + ++   +E  Q++ N      EN    ++ L
Sbjct: 435 TTVASAATQASANVETVAAATEELAA-SISEIAKQVERSQAVANRAEQEAENTTNQVRAL 493

Query: 276 GNESKKINEVTVLIKDVAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSV 335
            +   +I EV VLI D+A QT LLALNA+IEAARAGDAGKGFAVVA+E+K+LA +  K+ 
Sbjct: 494 SDNVGRIGEVVVLINDIAAQTNLLALNATIEAARAGDAGKGFAVVANEVKNLANQTAKAT 553

Query: 336 EDINRTINGVNR------KVEATIDLGISGKDEVDKGVI-AIDEVNGAFLKIKESVETTS 388
           ++I   I  V        K   TI   IS   E+   V  A+ E   A  +I  +VE  +
Sbjct: 554 DEIASQIKAVQEGTGNAVKAIDTISKVISEMGEISASVASAVQEQTAATGEIARNVEQAA 613

Query: 389 EKINSIKVNAERAVNNVETALKDSQDIASISEEFAATAEELTASAE----EQSRIMNEI 443
                +  N    +N+VE A +++   A   E+ + +A +L+  AE    E  R ++++
Sbjct: 614 AGTAEVSSN----INSVEQAARETGHAA---EQISESATDLSKQAEFLRGEVGRFLHQV 665



 Score = 45.8 bits (107), Expect = 5e-09
 Identities = 93/401 (23%), Positives = 158/401 (39%), Gaps = 38/401 (9%)

Query: 87  EMFKTVISDFEK---LKKDENSLKTYKKDVSNTFS--ELHTIFKS-LEQGDFTIRANTDR 140
           E+F   ++ F+K   L+K +  L   + +V    +  +L  I K+ ++ GD+   A    
Sbjct: 113 ELFTGYMAGFDKVADLRKAKLELVEKRMNVVGVAARKDLSQIMKTAMDDGDYEAAALAGV 172

Query: 141 KYNALQVTTNNAIVNVSTMVNDLKKQIEYLNAELLKAKEDLVRAEETSEQVADAASQVAT 200
              AL +   NAI  ++   + L K  +    E +K  E L +     E+   AA     
Sbjct: 173 AQEALLLGRLNAIKFLADPSDALVKDAQTEIEEFVKEAETLTKRLRNPERKRLAAEAETN 232

Query: 201 AAA-----DQSAKLQDVSDQLEATSEITSAV--TDAADDTV----TAAIEIEENSEMGVK 249
           A A      Q A   +  D+L        AV   D AD TV     A  + + ++E G+ 
Sbjct: 233 AKAYRDAFTQVAAATNALDKLVFKDMAALAVQFADLADQTVHSQDQAMDQQKADTEAGMA 292

Query: 250 KVENAIETMQSITNVIENLGKAIQELGNESKKINEVTVLIKDVAEQTGLLALNASIE-AA 308
           +   A     + T  I  LG A+      ++ I  VT L       T L   N +++  A
Sbjct: 293 RSNTA-----TWTGAIIALGLAVLLSWLIARSI--VTPLSAMTGAMTELSKGNKTVDIPA 345

Query: 309 RAGDAGKGFAVVASEI--KSLAEEIKKSVEDINRTINGVNRKVEATIDLGISGKDEVDKG 366
           R      G    A EI  ++  +  K   E   + +     +  A   +  + ++ V K 
Sbjct: 346 RERTDEIGAMAQAMEIFKENTLKMDKMQAEQEAQKVKAEADRKAALHHMADTFEESVGKV 405

Query: 367 V----IAIDEVNGAFLKIKESVETTSEKINSIKVNAERAVNNVETALKDSQDIASISEEF 422
           V     A  E+ GA  ++  +   TS +  ++   A +A  NVET       +A+ +EE 
Sbjct: 406 VQTVTSAATELQGASSQMAGTAHETSAQATTVASAATQASANVET-------VAAATEEL 458

Query: 423 AATAEELTASAEEQSRIMNEIDDAIEEITKSSEQISKDVSK 463
           AA+  E+    E    + N  +   E  T     +S +V +
Sbjct: 459 AASISEIAKQVERSQAVANRAEQEAENTTNQVRALSDNVGR 499