Pairwise Alignments

Query, 920 a.a., chemotaxis protein CheA from Methanococcus maripaludis S2

Subject, 890 a.a., Sensor histidine kinase RcsC from Xanthobacter sp. DMC5

 Score =  290 bits (742), Expect = 3e-82
 Identities = 159/403 (39%), Positives = 251/403 (62%), Gaps = 10/403 (2%)

Query: 524 KNTVDAT-SKKQAENSSSKKSQTVRVNIEKLDKLMNLVGEVVINRANFTQIATKYDLKEL 582
           K   DAT +  QA  +    +Q++RV++  L++LM +V E+V+ R    +IA ++D  E 
Sbjct: 189 KADADATHAAAQAGEAHGVAAQSIRVHVGVLEQLMTMVSELVLTRNQLMEIARRHDEPEY 248

Query: 583 HNAVGRLNMLATELQEEVMGMRMIPVAFVFNRFPRTVRDTAKALDKEIDFEIEGSDIELD 642
             ++ RL+ +  ELQE VM  RM P+   + + PR VRD A+ L K+I+ E  G+D ELD
Sbjct: 249 KVSLQRLSNVTGELQEAVMRTRMQPIGNAWQKLPRIVRDLAQELGKQIELEQVGADTELD 308

Query: 643 RTVLDELAEPLTHLIRNSLDHGIEHADERIKLGKPEKGILKLIATRQRDRVNIIIRDDGK 702
           R VLD++ +PLTH++RNS DHG+E  ++R   GK E+G+++L A  +   V + I DDG+
Sbjct: 309 RQVLDQIKDPLTHMVRNSADHGLEMPEQRRAAGKSERGLIRLSAYHEGGHVIVEISDDGR 368

Query: 703 GIDPEAMRKKAFEKGLYSKEEAEKLTDNEAVNVIFHPGFSTAEVVSDVSGRGVGMDVVRS 762
           G+D   +++KA E GL ++ E  K+ D++    IFH GFSTA+ V++VSGRGVGMDVVRS
Sbjct: 369 GLDVARIKQKALENGLATEAELAKMPDSQVFRFIFHAGFSTAQKVTNVSGRGVGMDVVRS 428

Query: 763 KIESLGGSVTVNSEVGKGTEITLHLPLTMAIIQTLLIRLNEHIYALPLTSVLDVISVE-- 820
            +ES+GG+V V S  G+G+   + +PLT+AI+  L++R     +ALP ++V +++ V+  
Sbjct: 429 NLESIGGTVDVRSRQGEGSTFVIKIPLTLAIVPALIVRAAGERFALPQSAVEELVRVQAG 488

Query: 821 -KEQIKNLEGQEAIIYRNHILPVIWLKDALNTSGFSDSDD------LYVVVVEKNKGKVG 873
              +I  L     +  R+ +LP++ L   L  S   D  D        +VV++      G
Sbjct: 489 SDHEITWLNNSPVLGLRDRLLPIVSLGALLGLSPERDGRDEALWERALIVVMKVGHQTFG 548

Query: 874 MILDEVIGRDEIVVKPLTGILKNINGLAGATILGDGRVALILD 916
           ++++ V   +EIVVKP+   L+ +  ++G+TILGDGRV +ILD
Sbjct: 549 VVVEAVSHTEEIVVKPMASALRQLPMVSGSTILGDGRVIMILD 591



 Score = 62.4 bits (150), Expect = 1e-13
 Identities = 35/126 (27%), Positives = 68/126 (53%), Gaps = 3/126 (2%)

Query: 4   MEQYKELFMTEAEEHLQSLNQNMVELENCPEDSERIINMIFRSAHTLKGSARTLGFEHIS 63
           M+     F+TE  E L   +  +V+ E  P +++ I+N IFR  HT+KG+   +G   ++
Sbjct: 1   MDDLLREFLTETSESLDVADVELVKFEQDPNNAQ-ILNNIFRLVHTIKGTCGFIGLPRLA 59

Query: 64  SLTHHMEDILDYIRDGKIKVNPEIVDLLFKCLDALETMVSEVSDGEDTTSVDVD-SLVEV 122
           SL H  E ++D  R+G+  V  + V L+   +D ++ ++  V + E +     D  L+ +
Sbjct: 60  SLAHAAETLMDRFREGR-PVTTDAVGLVLSTIDRIKLLLQHVEETEGSEPEGEDRDLISL 118

Query: 123 IKSVKE 128
           ++++ E
Sbjct: 119 LEAMAE 124



 Score = 32.0 bits (71), Expect = 2e-04
 Identities = 29/114 (25%), Positives = 57/114 (50%), Gaps = 11/114 (9%)

Query: 807 ALPLTSVLDVISVEKEQIKNLEGQEAIIYRNHILPVIWLKDALNTSGFSDSDDLYVVVVE 866
           A+PL  V  +  +E  +I+ + G   + YR  ++PV++  + +             ++V 
Sbjct: 639 AVPLGLVTRIEELEVARIERVNGYPVLQYRGALIPVLYANEEVQRVAAGTQP----MLVF 694

Query: 867 KNKGKV-GMILDEVIGRDEIVVKPLTGIL--KNINGLAGATILGDGRVALILDL 917
            + G+V G+++DE++   +IV   L   L   N+  + GA +L  G+   ILD+
Sbjct: 695 ADGGRVMGLVVDEIV---DIVEAELDMELSPSNMPEVLGAAVL-SGQATEILDV 744