Pairwise Alignments

Query, 920 a.a., chemotaxis protein CheA from Methanococcus maripaludis S2

Subject, 735 a.a., chemotaxis protein CheA from Pseudomonas simiae WCS417

 Score =  320 bits (821), Expect = 2e-91
 Identities = 159/390 (40%), Positives = 257/390 (65%), Gaps = 1/390 (0%)

Query: 529 ATSKKQAENSSSKKSQTVRVNIEKLDKLMNLVGEVVINRANFTQIATKYDLKELHNAVGR 588
           A +   A+  +S+   TVRV+  +LD +MN+VGE+V+ R    ++      + +  AV  
Sbjct: 334 AAAAPVADKPASEAETTVRVDTARLDDIMNMVGELVLVRNRLVRLGLSSGDEAMQKAVSN 393

Query: 589 LNMLATELQEEVMGMRMIPVAFVFNRFPRTVRDTAKALDKEIDFEIEGSDIELDRTVLDE 648
           L+++  +LQ  VM  RM P+  VF RFPR VRD A+ L KEI+ E+ G + +LD+ +++ 
Sbjct: 394 LDVVTADLQTAVMKTRMQPIKKVFGRFPRLVRDLARQLKKEINLELVGEETDLDKNLVEA 453

Query: 649 LAEPLTHLIRNSLDHGIEHADERIKLGKPEKGILKLIATRQRDRVNIIIRDDGKGIDPEA 708
           LA+PL HL+RN++DHG+E  +ER   GK   G + L A ++ D + + I DDGKG+DP  
Sbjct: 454 LADPLVHLVRNAVDHGVETPEEREASGKSRNGKVILAAEQEGDHILLSITDDGKGMDPAI 513

Query: 709 MRKKAFEKGLYSKEEAEKLTDNEAVNVIFHPGFSTAEVVSDVSGRGVGMDVVRSKIESLG 768
           +R  A ++G+  K+ A++LTD+E  N+IF PGFST   +SDVSGRGVGMDVV++KI  L 
Sbjct: 514 LRNIAVKRGVMDKDAADRLTDSECYNLIFAPGFSTKTEISDVSGRGVGMDVVKTKISQLN 573

Query: 769 GSVTVNSEVGKGTEITLHLPLTMAIIQTLLIRLNEHIYALPLTSVLDVISVEKEQIKNLE 828
           GS+ + S  G+G++I + +PLT+AI+ TL++ L    +A PL +V ++  ++  +   ++
Sbjct: 574 GSINIYSTKGQGSKIVIKVPLTLAIMPTLMVMLGNQAFAFPLVNVNEIFHLDLSRTNVVD 633

Query: 829 GQEAIIYRNHILPVIWLKDALNTSG-FSDSDDLYVVVVEKNKGKVGMILDEVIGRDEIVV 887
           GQE +I R+  LP+ +LK  L  S    +  + +VV++     ++G ++D+++G++E+V+
Sbjct: 634 GQEVVIVRDKALPLFYLKRWLVASAKHEEQREGHVVILSVGTQRIGFVVDQLVGQEEVVI 693

Query: 888 KPLTGILKNINGLAGATILGDGRVALILDL 917
           KPL  +L+   G++GATI GDGR+ALILD+
Sbjct: 694 KPLGKMLQGTPGMSGATITGDGRIALILDV 723



 Score = 81.6 bits (200), Expect = 2e-19
 Identities = 51/199 (25%), Positives = 101/199 (50%), Gaps = 6/199 (3%)

Query: 5   EQYKELFMTEAEEHLQSLNQNMVELENCPEDSERIINMIFRSAHTLKGSARTLGFEHISS 64
           E+  + F+ EA E L+ L++ +VELE+ P+D+  ++N IFR  HT+KG A  L    +  
Sbjct: 7   EEILQDFLVEAGEILEQLSEQLVELESRPDDAN-LLNAIFRGFHTVKGGAGFLQLHELVE 65

Query: 65  LTHHMEDILDYIRDGKIKVNPEIVDLLFKCLDALETMVSEVSDGEDTTSVDVDSLVEVIK 124
             H  E++ D +R G+  V+ E++D++ + LDA+  M SEV +    T+   + L  + +
Sbjct: 66  CCHIAENVFDILRKGERHVDSELMDVILEALDAVNGMFSEVRERAPITAATPELLAALAR 125

Query: 125 SVKEKYLSGENSKEDSLDYSDPNEVAKKQVEEKTVNNISSNSGSIHLVNESSIILIEGQS 184
             +   LS     E +    +P   A+  V +     + ++  ++    E+    +   +
Sbjct: 126 YAEPADLSAAPVAEAA---PEPVAEAEPDVTDSEFEQLLNSLSAVKAEAEAPAAAVAAPT 182

Query: 185 NNSVVEKPENLDSVLNQMH 203
           +  + +     +S+L+Q+H
Sbjct: 183 SEDITD--AEFESLLDQLH 199