Pairwise Alignments

Query, 920 a.a., chemotaxis protein CheA from Methanococcus maripaludis S2

Subject, 1974 a.a., Signal transduction histidine kinase CheA (EC 2.7.3.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  192 bits (489), Expect = 1e-52
 Identities = 111/323 (34%), Positives = 175/323 (54%), Gaps = 5/323 (1%)

Query: 595  ELQEEVMGMRMIPVAFVFNRFPRTVRDTAKALDKEIDFEIEGSDIELDRTVLDELAEPLT 654
            ELQ +++  RM+    +  R  R VR  +K   K++  +I G +IE+DR VLD +     
Sbjct: 1485 ELQRDLLRTRMVEFEGISERLYRVVRQASKETGKQVRLDITGGNIEMDRGVLDRMTAAFE 1544

Query: 655  HLIRNSLDHGIEHADERIKLGKPEKGILKLIATRQRDRVNIIIRDDGKGIDPEAMRKKAF 714
            HL+RNS+ HGIE  + R + GKP +G ++++   + + V+++  DDG G+D   +R+K  
Sbjct: 1545 HLLRNSVAHGIEVPERRQQAGKPAEGQIEIVLGHELNDVSLVFTDDGAGLDLVRLREKGQ 1604

Query: 715  EKGLYSKEEAEKLTDNEAVNVIFHPGFSTAEVVSDVSGRGVGMDVVRSKIESLGGSVTVN 774
             +GL       +L+D EA  ++F PG STA  VS+++GRG+GMDVVR+ + +LGG +   
Sbjct: 1605 AQGLI--PPGTQLSDEEAAQLVFEPGISTAREVSELAGRGIGMDVVRNDVVALGGRIETA 1662

Query: 775  SEVGKGTEITLHLPLTMAIIQTLLIRLNEHIYALPLTSVLDVISVEKEQIKNLEGQEAII 834
            ++ G+GT   L LPLT A+ Q +++R       +P   V  V  +  E +        + 
Sbjct: 1663 TQAGQGTSFKLVLPLTTAVTQVVMLRAGGLTVGVPSNLVEVVRRLGNEDLAKAYASGHLN 1722

Query: 835  YRNHILPVIWLKDALNTSGFS---DSDDLYVVVVEKNKGKVGMILDEVIGRDEIVVKPLT 891
                 +P  W    L +S  S         VV+      +V + +DEV+G  E+VVK L 
Sbjct: 1723 VAGEDVPFYWSGALLQSSPRSTEVHGRTQPVVIFRSAAQRVALHVDEVLGNQEVVVKNLG 1782

Query: 892  GILKNINGLAGATILGDGRVALI 914
              L  + GLAG ++L  G VALI
Sbjct: 1783 SQLSRLPGLAGMSVLASGAVALI 1805



 Score = 44.3 bits (103), Expect = 8e-08
 Identities = 90/473 (19%), Positives = 177/473 (37%), Gaps = 69/473 (14%)

Query: 10   LFMTEAEEHLQSLNQNMVELENCPEDSERIINMIFRSAHTLKGSARTLGFEHISSLTHHM 69
            +F  EA+E +  L+  + +    P++      ++ R+ HTLKGSAR  G   +  + H M
Sbjct: 1204 IFAEEAQELIPQLDGALRQWVARPDNGSARAEVL-RNLHTLKGSARLAGALRLGEMAHRM 1262

Query: 70   EDILDYIRDGKIKVNPEIVDLLFKCLDALETMVSEVSDGEDTTSVDVDSLVEVIKSVKEK 129
            E   +  R G        ++ L    DA+     ++ + +         +++++  V E 
Sbjct: 1263 ETAAE--RLGSDLQRGADLEALQTAFDAISARFEQLRNAD-------AQIIDIVPPVPE- 1312

Query: 130  YLSGENSKEDSLDYSDPNEVAKKQVEEKTVNNISSNSGSIHLVNESSIILIEGQSNNSVV 189
                      S+        A  +  +            I L    ++  ++ ++  +V 
Sbjct: 1313 ----------SVPARPVPAAAAPEAADAAATATQGGLSGIPLPQAPAV--LQARAGAAVR 1360

Query: 190  EKPENLDSVLNQMHE---SASALLTILDALEYGELKDTVKNIDELSNAMLNETVAITENS 246
             +PE LD ++NQ  E   + S + + L  L  G LKD   N+D L   + +  +      
Sbjct: 1361 VRPELLDRLVNQTGEVMITRSRMESELVTLR-GSLKDLTGNLDRLRGQLRDIELQAETQM 1419

Query: 247  LSVLKSALSTMQQIAKVVETGSRAKCDYSELNEKISLTLSETVGESVEDKEIILDHTIFD 306
             S L  A    Q    +         ++        LT    + ESV D   +  +    
Sbjct: 1420 QSRLAQARDADQSFDPL---------EFDRFTRVQELT--RMMAESVNDVATVQRNLQRA 1468

Query: 307  LEEVSEELISEINENKKIYH--VKSKVVEDCLLKAVRLTMVLSKLKEIGTIISSVPAEEN 364
            +E   + L+++  + +++    +++++VE   +      +V    KE G  +        
Sbjct: 1469 VEATEDSLVAQARQTRELQRDLLRTRMVEFEGISERLYRVVRQASKETGKQVRLD----- 1523

Query: 365  LLSSGSGELDVLISTDLDNINILDSVCEMEYVLSTEVKFEHETAVTQVADAEIPETEKSL 424
             ++ G+ E+D           +LD +            FEH    +     E+PE  +  
Sbjct: 1524 -ITGGNIEMD---------RGVLDRM---------TAAFEHLLRNSVAHGIEVPERRQQA 1564

Query: 425  ETPAKFKINIKL-----DEECLLKAVRAYMVIKDLKEKGTVLETEPPEEKIQE 472
              PA+ +I I L     D   +     A + +  L+EKG      PP  ++ +
Sbjct: 1565 GKPAEGQIEIVLGHELNDVSLVFTDDGAGLDLVRLREKGQAQGLIPPGTQLSD 1617



 Score = 41.6 bits (96), Expect = 5e-07
 Identities = 25/105 (23%), Positives = 52/105 (49%), Gaps = 1/105 (0%)

Query: 2   DDMEQYKELFMTEAEEHLQSLNQNMVELENCPEDSERIINMIFRSAHTLKGSARTLGFEH 61
           +D +   ++F+ EA E + +  + +  L+  P D E +  +  R+ HTLKGS+R +G + 
Sbjct: 692 NDEDDLLDIFLEEAREVVANGLEAVSHLQVQPSDLEHLTTLR-RAFHTLKGSSRMVGLDE 750

Query: 62  ISSLTHHMEDILDYIRDGKIKVNPEIVDLLFKCLDALETMVSEVS 106
                  ME +L+ +   +   +P ++ L  + +      V ++S
Sbjct: 751 FGEAAWAMEQLLNTVLAEQRPASPPLLTLAGEAMTEFGRWVDDIS 795



 Score = 33.1 bits (74), Expect = 2e-04
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 12/66 (18%)

Query: 10   LFMTEAEEHLQSLNQNMVEL-----ENCPEDSERIINMIFRSAHTLKGSARTLGFEHISS 64
            +++ EA+E  + LN  + E      E  PE +E +       AH+L GS+ T+GF+ +S 
Sbjct: 1002 VYLNEADEWSRRLNTVLTEWALERHEPVPEQAEAL-------AHSLAGSSATVGFDSLSD 1054

Query: 65   LTHHME 70
            +   +E
Sbjct: 1055 IARALE 1060