Pairwise Alignments

Query, 920 a.a., chemotaxis protein CheA from Methanococcus maripaludis S2

Subject, 654 a.a., fused chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY: sensory histidine kinase/signal sensing protein (NCBI) from Escherichia coli BW25113

 Score =  299 bits (766), Expect = 3e-85
 Identities = 182/558 (32%), Positives = 316/558 (56%), Gaps = 31/558 (5%)

Query: 372 ELDVLISTDLDNINILDSVCEMEYVLSTEVKFEHETAVTQ---VADAEIPETEKSLETPA 428
           +LD    +   +    D +C+    L+ E K E  +AVT+   VA +E  + +   ++P 
Sbjct: 101 QLDAYKQSQEPDAASFDYICQALRQLALEAKGETPSAVTRLSVVAKSEPQDEQSRSQSPR 160

Query: 429 KFKINIKLDEECLLKAVRAYMVIKDLKEKGTVLETEPPEEKIQEGTLGGNTVTIYYDSDE 488
           +  ++        LKA    ++ ++L    T+ +             G ++++     D 
Sbjct: 161 RIILS-------RLKAGEVDLLEEELGHLTTLTDV----------VKGADSLSAILPGDI 203

Query: 489 SEDDIKEIISKTPEITEFLVNVQKDTNNLKDNTKIKNTVDATSKKQAENSS---SKKSQT 545
           +EDDI  ++    E  +      + +  +     +K   +     + E      S +S +
Sbjct: 204 AEDDITAVLCFVIEADQITFETVEVSPKISTPPVLKLAAEQAPTGRVEREKTTRSNESTS 263

Query: 546 VRVNIEKLDKLMNLVGEVVINRANFTQIATKYDLK---ELHNAVGRLNMLATELQEEVMG 602
           +RV +EK+D+L+NLVGE+VI ++   Q +++ D     +L  ++G+L   A +LQE VM 
Sbjct: 264 IRVAVEKVDQLINLVGELVITQSMLAQRSSELDPVNHGDLITSMGQLQRNARDLQESVMS 323

Query: 603 MRMIPVAFVFNRFPRTVRDTAKALDKEIDFEIEGSDIELDRTVLDELAEPLTHLIRNSLD 662
           +RM+P+ +VF+R+PR VRD A  L K+++  + GS  ELD+++++ + +PLTHL+RNSLD
Sbjct: 324 IRMMPMEYVFSRYPRLVRDLAGKLGKQVELTLVGSSTELDKSLIERIIDPLTHLVRNSLD 383

Query: 663 HGIEHADERIKLGKPEKGILKLIATRQRDRVNIIIRDDGKGIDPEAMRKKAFEKGLYSKE 722
           HGIE  ++R+  GK   G L L A  Q   + I + DDG G++ E +  KA  +GL    
Sbjct: 384 HGIELPEKRLAAGKNSVGNLILSAEHQGGNICIEVTDDGAGLNRERILAKAASQGL---T 440

Query: 723 EAEKLTDNEAVNVIFHPGFSTAEVVSDVSGRGVGMDVVRSKIESLGGSVTVNSEVGKGTE 782
            +E ++D+E   +IF PGFSTAE V+DVSGRGVGMDVV+  I+ +GG V + S+ G GT 
Sbjct: 441 VSENMSDDEVAMLIFAPGFSTAEQVTDVSGRGVGMDVVKRNIQKMGGHVEIQSKQGTGTT 500

Query: 783 ITLHLPLTMAIIQTLLIRLNEHIYALPLTSVLDVISVEKEQIKNLEGQEAII-YRNHILP 841
           I + LPLT+AI+  + +R+ + ++ LPL +V++ +   +  +  L G E ++  R   LP
Sbjct: 501 IRILLPLTLAILDGMSVRVADEVFILPLNAVMESLQPREADLHPLAGGERVLEVRGEYLP 560

Query: 842 VIWLKDALNTSGF-SDSDDLYVVVVEKNKGKVGMILDEVIGRDEIVVKPLTGILKNINGL 900
           ++ L    N +G  +++    VV+++    +  +++D++IG+ ++VVK L    + + G+
Sbjct: 561 IVELWKVFNVAGAKTEATQGIVVILQSGGRRYALLVDQLIGQHQVVVKNLESNYRKVPGI 620

Query: 901 AGATILGDGRVALILDLN 918
           + ATILGDG VALI+D++
Sbjct: 621 SAATILGDGSVALIVDVS 638



 Score = 76.3 bits (186), Expect = 6e-18
 Identities = 48/202 (23%), Positives = 103/202 (50%), Gaps = 11/202 (5%)

Query: 3   DMEQYKELFMTEAEEHLQSLNQNMVELENCPEDSERIINMIFRSAHTLKGSARTLGFEHI 62
           D+  + + F  EA+E L  + Q+++ L+    D+E++ N IFR+AH++KG A T GF  +
Sbjct: 4   DISDFYQTFFDEADELLADMEQHLLVLQPEAPDAEQL-NAIFRAAHSIKGGAGTFGFSVL 62

Query: 63  SSLTHHMEDILDYIRDGKIKVNPEIVDLLFKCLDALETMVSEVSDGEDTTSVDVDSLVEV 122
              TH ME++LD  R G++++N +I++L  +  D ++  +      ++  +   D + + 
Sbjct: 63  QETTHLMENLLDEARRGEMQLNTDIINLFLETKDIMQEQLDAYKQSQEPDAASFDYICQA 122

Query: 123 IKSVKEKYLSGENSKEDSLDYSDPNEVAKKQVEEKTVNNISSNSGSIHLVNESSIILIEG 182
           ++      L+ E   E     +  + VAK + +++   + S     +  +    + L+E 
Sbjct: 123 LRQ-----LALEAKGETPSAVTRLSVVAKSEPQDEQSRSQSPRRIILSRLKAGEVDLLEE 177

Query: 183 QSNN-----SVVEKPENLDSVL 199
           +  +      VV+  ++L ++L
Sbjct: 178 ELGHLTTLTDVVKGADSLSAIL 199