Pairwise Alignments

Query, 920 a.a., chemotaxis protein CheA from Methanococcus maripaludis S2

Subject, 654 a.a., chemotaxis protein CheA from Escherichia coli ECRC99

 Score =  299 bits (765), Expect = 4e-85
 Identities = 182/558 (32%), Positives = 315/558 (56%), Gaps = 31/558 (5%)

Query: 372 ELDVLISTDLDNINILDSVCEMEYVLSTEVKFEHETAVTQ---VADAEIPETEKSLETPA 428
           +LD    +   +    D +C+    L+ E K E  +AVT+   VA +E  + +   + P 
Sbjct: 101 QLDAYKQSQEPDAASFDYICQALRQLALEAKGETPSAVTRLSVVAKSEPQDEQSRSQLPR 160

Query: 429 KFKINIKLDEECLLKAVRAYMVIKDLKEKGTVLETEPPEEKIQEGTLGGNTVTIYYDSDE 488
           +  ++        LKA    ++ ++L    T+ +             G ++++     D 
Sbjct: 161 RIILS-------RLKASEVDLLEEELGHLTTLTDV----------VKGADSLSAILPGDI 203

Query: 489 SEDDIKEIISKTPEITEFLVNVQKDTNNLKDNTKIKNTVDATSKKQAENSS---SKKSQT 545
           +EDDI  ++    E  +      + +  +     +K   +     + E      S +S +
Sbjct: 204 AEDDITAVLCFVIEADQITFETVEVSPKISTPPVLKLAAEQAPTGRVEREKTTRSSESTS 263

Query: 546 VRVNIEKLDKLMNLVGEVVINRANFTQIATKYDLK---ELHNAVGRLNMLATELQEEVMG 602
           +RV +EK+D+L+NLVGE+VI ++   Q +++ D     +L  ++G+L   A +LQE VM 
Sbjct: 264 IRVAVEKVDQLINLVGELVITQSMLAQRSSELDPVNHGDLITSMGQLQRNARDLQESVMS 323

Query: 603 MRMIPVAFVFNRFPRTVRDTAKALDKEIDFEIEGSDIELDRTVLDELAEPLTHLIRNSLD 662
           +RM+P+ +VF+R+PR VRD A  L K+++  + GS  ELD+++++ + +PLTHL+RNSLD
Sbjct: 324 IRMMPMEYVFSRYPRLVRDLAGKLGKQVELTLVGSSTELDKSLIERIIDPLTHLVRNSLD 383

Query: 663 HGIEHADERIKLGKPEKGILKLIATRQRDRVNIIIRDDGKGIDPEAMRKKAFEKGLYSKE 722
           HGIE  ++R+  GK   G L L A  Q   + I + DDG G++ E +  KA  +GL    
Sbjct: 384 HGIELPEKRLAAGKNSVGNLILSAEHQGGNICIEVTDDGAGLNRERILAKAASQGL---T 440

Query: 723 EAEKLTDNEAVNVIFHPGFSTAEVVSDVSGRGVGMDVVRSKIESLGGSVTVNSEVGKGTE 782
            +E ++D+E   +IF PGFSTAE V+DVSGRGVGMDVV+  I+ +GG V + S+ G GT 
Sbjct: 441 VSENMSDDEVAMLIFAPGFSTAEQVTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQGTGTT 500

Query: 783 ITLHLPLTMAIIQTLLIRLNEHIYALPLTSVLDVISVEKEQIKNLEGQEAII-YRNHILP 841
           I + LPLT+AI+  + +R+ + ++ LPL +V++ +   +  +  L G E ++  R   LP
Sbjct: 501 IRILLPLTLAILDGMSVRVADEVFILPLNAVMESLQPREADLHPLAGGERVLEVRGEYLP 560

Query: 842 VIWLKDALNTSGF-SDSDDLYVVVVEKNKGKVGMILDEVIGRDEIVVKPLTGILKNINGL 900
           ++ L    N +G  +++    VV+++    +  +++D++IG+ ++VVK L    + + G+
Sbjct: 561 IVELWKVFNVAGAKTEATQGIVVILQSGGRRYALLVDQLIGQHQVVVKNLESNYRKVPGI 620

Query: 901 AGATILGDGRVALILDLN 918
           + ATILGDG VALI+D++
Sbjct: 621 SAATILGDGSVALIVDVS 638



 Score = 75.9 bits (185), Expect = 8e-18
 Identities = 35/124 (28%), Positives = 72/124 (58%), Gaps = 1/124 (0%)

Query: 3   DMEQYKELFMTEAEEHLQSLNQNMVELENCPEDSERIINMIFRSAHTLKGSARTLGFEHI 62
           D+  + + F  EA+E L  + Q+++ L+    D+E++ N IFR+AH++KG A T GF  +
Sbjct: 4   DISDFYQTFFDEADELLADMEQHLLVLQPEAPDAEQL-NAIFRAAHSIKGGAGTFGFSVL 62

Query: 63  SSLTHHMEDILDYIRDGKIKVNPEIVDLLFKCLDALETMVSEVSDGEDTTSVDVDSLVEV 122
              TH ME++LD  R G++++N +I++L  +  D ++  +      ++  +   D + + 
Sbjct: 63  QETTHLMENLLDEARRGEMQLNTDIINLFLETKDIMQEQLDAYKQSQEPDAASFDYICQA 122

Query: 123 IKSV 126
           ++ +
Sbjct: 123 LRQL 126