Pairwise Alignments

Query, 920 a.a., chemotaxis protein CheA from Methanococcus maripaludis S2

Subject, 683 a.a., Gliding motility regulatory protein from Alteromonas macleodii MIT1002

 Score =  135 bits (340), Expect = 9e-36
 Identities = 110/427 (25%), Positives = 199/427 (46%), Gaps = 50/427 (11%)

Query: 503 ITEFLVNVQKDTNNLKDNTKIKNTVDATSKKQAENSSSKKSQTVRVNIEKLDKLMNLVGE 562
           + + L N  +    +     +   +    K  +   +S +++ ++ +I+K  K+++ + E
Sbjct: 153 LDDLLANTSELKLLVSSGNSVLENIGKVEKVLSHLCTSNRTEAIQ-DIDKASKMLSSLKE 211

Query: 563 VVINRANFTQIATKYDLKELHNAVGRLNMLATELQEEVMGMRMIPVAFVFNRFPRTVRDT 622
                       TK    EL N +         L++ V+  R+ P++         V+  
Sbjct: 212 -----------QTKKISSELQNRL-------KTLEKVVLKSRLKPISDACE----PVQAF 249

Query: 623 AKALDKEIDFEIEGSDIELDRTVLDELAEPLTHLIRNSLDHGIEHADERIKLGKPEKGIL 682
            ++ ++ ++FE  G     DR +++ L   L HL RNS++HG E   ER++ GK     +
Sbjct: 250 LRSEERTVNFEARGVHHSTDRYIVERLTTVLMHLARNSIEHGFEDTQERVRQGKAPHCKI 309

Query: 683 KLIATRQRDRVNIIIRDDGKGIDPEAMRKKAFEKGLYSKEEAEKLTDNEAVNVIFHPGFS 742
           ++   ++   + ++  DDGKGID + +RK     G  S      L D+  +NV+F PG S
Sbjct: 310 EIEVRKEGRNIRLLYADDGKGIDRDRLRKAIVGLGDVS------LNDDINLNVLFQPGVS 363

Query: 743 TAEVVSDVSGRGVGMDVVRSKIESLGGSVTVNSEVGKGTEITLHLPLTMAIIQTLLIRLN 802
           T+E VS VSGRGVG+  V+  I  + GS+ V S  G G +  L +P  +A    L+  + 
Sbjct: 364 TSEKVSKVSGRGVGLYAVQCAISEMRGSIAVESTPGNGIQFDLVIPQDLANFDVLIATVA 423

Query: 803 E--------HI-YALPLTSVLDVISVEKEQIKNLEGQEAIIYRNHILPVIWLKDALNTSG 853
           +        HI Y   L S     +V    I+ +EG+   I     LP I++  A     
Sbjct: 424 DTNIAIDPNHIEYTCSLPSSYKYKNVHNHLIE-IEGKTYPIIE---LPPIFIGKATLAKA 479

Query: 854 FSDSDDLYVVVVEKNKGKVGMILDEVIGRDEIVVKPLTGILKNINGLAGATILGDGRVAL 913
                    +V++ N  K  +I+D++IG + ++V+ L   +    GL+GA I     +AL
Sbjct: 480 --------AIVLKHNSHKYVLIVDQLIGLESVIVRTLFEQIGESPGLSGAAIRDGRDIAL 531

Query: 914 ILDLNNI 920
           ++D+ ++
Sbjct: 532 LIDVAHV 538



 Score = 60.5 bits (145), Expect = 4e-13
 Identities = 61/256 (23%), Positives = 116/256 (45%), Gaps = 41/256 (16%)

Query: 9   ELFMTEAEEHLQSLNQNMVELENCPEDSERIINMIFRSAHTLKGSARTLGFEHISSLTHH 68
           E F  E +EHLQ +++ +  ++    D +++ N++FR+AH+LKG+AR++G   +  + H 
Sbjct: 12  ETFHLEMDEHLQVMSEVIPGMKFNSRDEDKL-NLLFRAAHSLKGAARSVGNSQVEDICHV 70

Query: 69  MEDILDYIRDGKIKVNPEIVDLLFKCLDALETMVSEVSDGEDTTSVDVDSLVEVIKSVKE 128
            E  L  ++     ++ + +    K L AL                              
Sbjct: 71  FESFLSELKKSDKLISKDDLATALKNLTAL------------------------------ 100

Query: 129 KYLSGENSKEDSLDYSDPNEVAKKQVEEKTVNNISSNSGSIHLVNES----SIILIEGQS 184
           K L   NS E  L   +    + +Q EE+T  ++    G+++  NES    S IL +  +
Sbjct: 101 KRLRNSNSGEQILPKDNDLSKSLQQDEEETQRSLV--RGAVNYANESIRLPSFILDDLLA 158

Query: 185 NNSVVEKPENLDSVLNQMHESASALLTILDALEYGELKDTVKNIDELSNAMLNETVAITE 244
           N S ++    L S  N + E+   +  +L  L      + +++ID+ S  ML+     T+
Sbjct: 159 NTSELKL---LVSSGNSVLENIGKVEKVLSHLCTSNRTEAIQDIDKASK-MLSSLKEQTK 214

Query: 245 NSLSVLKSALSTMQQI 260
              S L++ L T++++
Sbjct: 215 KISSELQNRLKTLEKV 230



 Score = 25.8 bits (55), Expect = 0.010
 Identities = 42/213 (19%), Positives = 83/213 (38%), Gaps = 26/213 (12%)

Query: 331 VVEDCLLKAVRLTMVLSKLKEIGTIISSVPAEENLLSSGSGELDVLISTDLDNINILDSV 390
           V E  L +  +   ++SK  ++ T + ++ A + L +S SGE   ++  D D        
Sbjct: 70  VFESFLSELKKSDKLISK-DDLATALKNLTALKRLRNSNSGEQ--ILPKDND-------- 118

Query: 391 CEMEYVLSTEVKFEHETAVTQVADAEIPETEKSLETPAKFKINIKLDEECLLKAVRAYMV 450
                 LS  ++ + E     +    +    +S+  P+ F ++  L     LK +     
Sbjct: 119 ------LSKSLQQDEEETQRSLVRGAVNYANESIRLPS-FILDDLLANTSELKLL----- 166

Query: 451 IKDLKEKGTVLETEPPEEKIQEGTLGGNTVTIYYDSDESEDDIKEIISKTPEITEFLVNV 510
              +    +VLE     EK+       N      D D++   +  +  +T +I+  L N 
Sbjct: 167 ---VSSGNSVLENIGKVEKVLSHLCTSNRTEAIQDIDKASKMLSSLKEQTKKISSELQNR 223

Query: 511 QKDTNNLKDNTKIKNTVDATSKKQAENSSSKKS 543
            K    +   +++K   DA    QA   S +++
Sbjct: 224 LKTLEKVVLKSRLKPISDACEPVQAFLRSEERT 256