Pairwise Alignments

Query, 920 a.a., chemotaxis protein CheA from Methanococcus maripaludis S2

Subject, 1506 a.a., hybrid sensor histidine kinase/response regulator from Acinetobacter baumannii LAC-4

 Score =  230 bits (586), Expect = 6e-64
 Identities = 129/350 (36%), Positives = 212/350 (60%), Gaps = 10/350 (2%)

Query: 579  LKELHNAVGRLNMLATELQEEVMGMRMIPVAFVFNRFPRTVRDTAKALDKEIDFEIEGSD 638
            +++  + + + + +  E+QE +M  R++P + +  R  R VR T+ AL++  +  +  ++
Sbjct: 1006 IRDTESLLLQQSRIQAEIQEGLMRTRLVPFSRLLPRLQRIVRQTSTALNRPAELFVNNTE 1065

Query: 639  IELDRTVLDELAEPLTHLIRNSLDHGIEHADERIKLGKPEKGILKLIATRQRDRVNIIIR 698
             ELDR +L+ L  PL H++RN++DHG+E   +R +  KPE G ++L   RQ   V ++  
Sbjct: 1066 GELDRNILERLVTPLEHMLRNAIDHGLEDRMQRQQANKPETGRIELNIQRQGTDVVVVFS 1125

Query: 699  DDGKGIDPEAMRKKAFEKGLYSKEEAEKLTDNEAVNVIFHPGFSTAEVVSDVSGRGVGMD 758
            DDG+GID E +R+KA   GL   E  + L   + + +IFHPG STAE V+ +SGRGVG+D
Sbjct: 1126 DDGQGIDVEKVRQKALLAGLIKPE--QDLEQQDILQLIFHPGLSTAEQVTQISGRGVGLD 1183

Query: 759  VVRSKIESLGGSVTVNSEVGKGTEITLHLPLTMAIIQTLLIRLNEHIYALPLTSVLDVIS 818
            VV+S I+SLGG V+V S  G+GT  T+ +P T+A+   L++++ +  +A+PL  +  +I 
Sbjct: 1184 VVQSDIKSLGGHVSVESIYGQGTTFTIRVPTTVAVSDALMVKVADQQFAIPLAQIDRIIR 1243

Query: 819  VEKEQIKNL--EGQEAIIYRNHILPVIWLKDALNTSGFSDSD----DLYVVVVEKNKGK- 871
            V    ++      QE   Y N   P+ +L + +        +     L V++++ N G+ 
Sbjct: 1244 VSPASLEQYFESPQELFEYENKRYPLRYLSEFVGNQPIPRLNGVMYSLPVLMIKANNGQT 1303

Query: 872  VGMILDEVIG-RDEIVVKPLTGILKNINGLAGATILGDGRVALILDLNNI 920
            V +++D++IG R +IVVKP+     +I  +AGATILGDG+V LILD  NI
Sbjct: 1304 VALLVDQLIGSRAQIVVKPIGQQFSSIGAIAGATILGDGQVCLILDGQNI 1353



 Score = 42.7 bits (99), Expect = 2e-07
 Identities = 61/305 (20%), Positives = 129/305 (42%), Gaps = 43/305 (14%)

Query: 6   QYKELFMTEAEE---HLQSLNQNMVELENCPEDSERIINMIFRSAHTLKGSARTLGFEHI 62
           ++ E+F+ E EE    LQ L    ++ EN    +E     I R  HTLKGS R +G +  
Sbjct: 25  EFLEIFIEEIEEIFVDLQPLINKWMQSENIATLTE-----IRRHFHTLKGSGRMIGAKSS 79

Query: 63  SSLTHHMEDILDYIRDGKIKVNPEI---VDLLF-----KCLDALE------------TMV 102
           + L   +ED L+ + +  +++ P I   V L+F     K +D  +             ++
Sbjct: 80  AELAWAVEDTLNRVINQSLQLTPTIQSYVQLVFKFYFLKLVDNFKQKRAHTLDFRPLILL 139

Query: 103 SEVSDGEDTTSVDVDSLVEVIKSVKEKYLSGENSKEDSLDYSDPNEVAKKQVEEKTVNNI 162
            +    + +    ++ L+++  ++  + ++G       LDY + + +A+  ++       
Sbjct: 140 GQQLQQQQSLEPALEELLQLSNTLMAETVTGL-----ELDYIEQDSLAEPIIQ------- 187

Query: 163 SSNSGSIHLVNESSIILIEGQSNNSVVEKPENLDSVLNQMHESASALLTILDALEYGELK 222
            +    I +  + ++ L   ++   +    + LD  L+Q ++S +AL+  L  L      
Sbjct: 188 -ATHTEIEINLDETLTLFMEEAEEHLATIHQFLDQELHQ-YDSYNALIRALHTLRGSSAM 245

Query: 223 DTVKNIDELSNAMLNETVAITENSLSVLKSALSTMQQIAKVVETGSRAKCDYSELNEKIS 282
             V+ I E S  + +    + +  LS     +  +Q+  + V         YS  +E++ 
Sbjct: 246 AQVETIFEASTKVEHLFKILLQEELSSHSEEILLLQEYREFVRDSLELLSRYSS-SEQLE 304

Query: 283 LTLSE 287
             L +
Sbjct: 305 ARLQQ 309



 Score = 38.9 bits (89), Expect = 2e-06
 Identities = 18/83 (21%), Positives = 45/83 (54%), Gaps = 1/83 (1%)

Query: 9   ELFMTEAEEHLQSLNQNMVELENCPEDSERIINMIFRSAHTLKGSARTLGFEHISSLTHH 68
           ++F+ EAEE L+ ++ ++  +    +++   +N + R  HTLKG A  +   ++  + H 
Sbjct: 526 DIFLEEAEELLEGIDTDL-NIWVGEQENFAALNNLMRYLHTLKGGANMVQATYLGLIAHE 584

Query: 69  MEDILDYIRDGKIKVNPEIVDLL 91
           +E I + +   ++    +++D +
Sbjct: 585 LESIYERLIQKQLVATSDLIDFI 607



 Score = 37.7 bits (86), Expect = 6e-06
 Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 4/89 (4%)

Query: 3   DMEQYKELFMTEAEEHLQSLNQNMVELENCPEDSERIINMIFRSAHTLKGSARTLGFEHI 62
           ++++   LFM EAEEHL +++Q  ++ E    DS    N + R+ HTL+GS+     E I
Sbjct: 196 NLDETLTLFMEEAEEHLATIHQ-FLDQELHQYDS---YNALIRALHTLRGSSAMAQVETI 251

Query: 63  SSLTHHMEDILDYIRDGKIKVNPEIVDLL 91
              +  +E +   +   ++  + E + LL
Sbjct: 252 FEASTKVEHLFKILLQEELSSHSEEILLL 280



 Score = 34.7 bits (78), Expect = 5e-05
 Identities = 52/279 (18%), Positives = 119/279 (42%), Gaps = 37/279 (13%)

Query: 8    KELFMTEAEEHLQSLNQNMVELENCPEDSERIINMIFRSAHTLKGSARTLGFEHISSLT- 66
            ++ F+ EA E L+ + +++++       +  I+  + R+ H+LKG AR +G E + ++  
Sbjct: 731  EQTFLEEATELLE-MAESLLKQWFEQRTNRSILLQLQRAVHSLKGGARMVGLEAVQAIAY 789

Query: 67   --------------------HHMEDILDYIRDGKIKVNPEIVDLLFKCLDALETMVSEVS 106
                                H +E  + +++D     N +  D L + L+ ++   + + 
Sbjct: 790  QLENAFEQFALHHFNSNIYDHLLESAIAWLKDAIFNHNYQHFDGLQQSLENIQFFETTIQ 849

Query: 107  DGEDTTSVDVDSLVEVIKSV-----KEKYLSGENSKEDSLDYSDPNEVAKKQVEEKTVNN 161
                 T  D+ +   V+  +     +   + G   + + LD ++        + EK ++ 
Sbjct: 850  IPTKLTRADLFNSEPVMTFIQGDGTEPPPMMGAWEQTERLDQNNEMIRVSADLIEKMIDL 909

Query: 162  ISSNSGSIHLVNESSIILIEGQSNNSVVEKPENLDSVLNQMHESASALLTILDA---LEY 218
               NS     +N S I +   Q ++++VE    +  + +Q+      L T + A   +E+
Sbjct: 910  SGENS-----INRSRIEMDLSQFSHTLVEMELAIQRLADQLRRMEGELETQIIAKHGIEH 964

Query: 219  GELKD-TVKNIDELSNA-MLNETVAITENSLSVLKSALS 255
                D     +D+ S+   L++++A + + L   K+ LS
Sbjct: 965  SRYTDFDPLEMDQYSSLNQLSKSLAESASDLVDFKNTLS 1003