Pairwise Alignments

Query, 277 a.a., diaminopimelate epimerase from Methanococcus maripaludis S2

Subject, 276 a.a., diaminopimelate epimerase from Pseudomonas sp. S08-1

 Score =  233 bits (594), Expect = 3e-66
 Identities = 119/277 (42%), Positives = 171/277 (61%), Gaps = 7/277 (2%)

Query: 1   MKFTKMHGLGNDYIYVDAISQKIENPNEISKFVSDRHFGIGSDGLVLILPSDV--ADFKM 58
           ++FTKMHGLGND++ +D ISQ      + +K   DRH GIG D L+L+        DF+ 
Sbjct: 3   LRFTKMHGLGNDFMVLDLISQHAHIQPKHAKAWGDRHTGIGFDQLLLVEAPTTPDVDFRY 62

Query: 59  RMFNSDGSEAEMCGNAIRCVGKFVYDKKMTDKSTITIETLAGIKVLEMTIENGKVVLVKV 118
           R+FNSDGSE E CGN  RC  +FV DK++T K  I +ET  GI  L +   +G+V+   V
Sbjct: 63  RIFNSDGSEVEQCGNGARCFARFVVDKRLTVKKQIRVETKGGIIELNLR-PDGQVI---V 118

Query: 119 DMGEPILKAEEIPVLSEKHPVIDEEITAKDYCYNFTCVSMGNPHAITYIENVDEFPLEKI 178
           DMG P L   +IP  +E    +   +           VSMGNPHA+  +++VD  P+  +
Sbjct: 119 DMGAPRLAPAQIPFQAEAE-ALSYAVEVDGQSVQLAAVSMGNPHAVLRVDDVDSAPVHSL 177

Query: 179 GPLFEIHEKFPRKTNVEFVELIDKNTVKMRVWERGAGETLACGTGACAVLTASVLKGYVG 238
           GP  E H +FP++ NV F++++D+   ++RVWERGAGET ACGTGACA   A++ +G++ 
Sbjct: 178 GPKLEHHPRFPQRVNVGFLQIVDRKQARLRVWERGAGETQACGTGACAAAVAAIRQGWMD 237

Query: 239 RKATVKLLGGDLTIEWNEFDKHIYMTGPATTVFEGEI 275
               ++L GG L+IEW    + + MTGPA  V+EG++
Sbjct: 238 SPLQLELPGGKLSIEWAGPGQPVMMTGPAVRVYEGQV 274