Pairwise Alignments

Query, 277 a.a., diaminopimelate epimerase from Methanococcus maripaludis S2

Subject, 291 a.a., Diaminopimelate epimerase (EC 5.1.1.7) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  206 bits (524), Expect = 5e-58
 Identities = 108/289 (37%), Positives = 171/289 (59%), Gaps = 16/289 (5%)

Query: 1   MKFTKMHGLGNDYIYVDAISQKIENPNEISKFVSDRHFGIGSDGLVLIL--PSDVADFKM 58
           ++FTKM G GND++ +D    ++       +F++DRHFG+G+D ++ +   P    DF+ 
Sbjct: 3   IRFTKMQGAGNDFVVLDETRGRLGLSAAQYRFLADRHFGVGADQILSVRASPGRGLDFEY 62

Query: 59  RMFNSDGSEAEMCGNAIRCVGKFVYDKKMTDKSTITIETLAGIKVLEMTIENGKVVLVKV 118
            + N+DG + E CGN  RC  ++V+DK ++  + + ++ +     L+M  +      V V
Sbjct: 63  VIHNADGGQVEQCGNGARCFVRYVHDKGLSTNNPLRVKVMNAELELKMHADGR----VTV 118

Query: 119 DMGEPILKAEEIPVLSE---KHPV--IDEEITAKDYCYNF--TCVSMGNPHAITYIENVD 171
           DMG P+   + +P  +E     P+   +    A  Y  +     +SMGNPHA+  +++V 
Sbjct: 119 DMGPPVFALDRVPFSAEGLTAEPMGGFERWPLALPYAGDVPVAVLSMGNPHAVLLVDDVQ 178

Query: 172 EFPLEKIGPLFEIHEKFPRKTNVEFVELIDKNTVKMRVWERGAGETLACGTGACAVLTAS 231
             P+   GP  E HE+FPR+ N  F++++ +  V++RV+ERGAGETLACGTGACA + A 
Sbjct: 179 AAPVPSWGPWIESHERFPRRVNAGFLQVVSRGEVRLRVYERGAGETLACGTGACAAVVAG 238

Query: 232 VLKGYVGRKATVKLLGGDLTIEWNE---FDKHIYMTGPATTVFEGEIDI 277
           +  G +  +  V   GG LTIEW +    D+ ++MTGPATTVF+GEIDI
Sbjct: 239 IRLGLLDERVDVHTRGGVLTIEWKDTPAHDQPVFMTGPATTVFDGEIDI 287