Pairwise Alignments

Query, 308 a.a., ribonuclease Z from Methanococcus maripaludis S2

Subject, 294 a.a., Ribonuclease Z from Xanthobacter sp. DMC5

 Score = 54.3 bits (129), Expect = 3e-12
 Identities = 69/313 (22%), Positives = 125/313 (39%), Gaps = 32/313 (10%)

Query: 1   MKITFLGTGAAIPTKYRAHPSISLKFDGEIFLFDCGENTQRQIIFTDVSPMKINNIFITH 60
           M+I  LGTG   P+  R      ++   ++ + D G     +++   +   ++ ++F +H
Sbjct: 1   MRIRLLGTGTPTPSLRRMSSGYVIETGNDVIVMDHGFGAHHRLLELGIPATRVTHLFFSH 60

Query: 61  LHGDHVLGLPGLLQSIAFQG--RKKPLNIYGPAETVKMIEHILGV-GYHSIDYPINVHEI 117
           LH DH      LL +   QG  R   L ++GPA    + E + G+ G ++ D        
Sbjct: 61  LHYDHCGDYGRLLLTRWDQGADRIPELKVFGPAPIADITERLFGLDGVYNADLVARTSHG 120

Query: 118 SSKTPERIIFTNNYEVFSYPVVHSVPALAYVFKQVKKPRMDLEKVKKLGIEIGPDLKRLK 177
           SS      +F         P    VP +  +           + +K  G  +  D     
Sbjct: 121 SSLD----LFKARGGTLPRP--RPVPEVTTLSPG--------DVIKGDGWTLETDQVNHF 166

Query: 178 DGFNVELNGEIITLNDVTLPPKKGICVGYSGDTIPLKEFAEFLKELKCNTLIHEATFDKT 237
             F V L   + T         +G+ V YSGD+ P +      ++  C+ L+H   +  +
Sbjct: 167 QPFLVTLGFRLTT--------PEGVFV-YSGDSGPAESMHVLARD--CDVLVHMCHY-LS 214

Query: 238 MERNAKETLHSTA--TDALNIAKLSGVSTVLLTHISARYDNLNAFENEIVEFKAENPEIH 295
               + +  HS     +   +A+ + V  ++LTHI+ ++D     E  + +        +
Sbjct: 215 GTNYSPDFSHSCMGHMELAELARDARVKNLVLTHITEQFDRPGLRERVVADISRVYGG-N 273

Query: 296 VLIAEDLMEYSLK 308
           +   EDLME  LK
Sbjct: 274 IFFGEDLMEIPLK 286