Pairwise Alignments

Query, 308 a.a., ribonuclease Z from Methanococcus maripaludis S2

Subject, 318 a.a., Ribonuclease Z (EC 3.1.26.11) from Variovorax sp. SCN45

 Score =  132 bits (332), Expect = 1e-35
 Identities = 89/311 (28%), Positives = 149/311 (47%), Gaps = 9/311 (2%)

Query: 1   MKITFLGTGAAIPTKYRAHPSISLK--FDGEIFLFDCGENTQRQIIFTDVSPMKINNIFI 58
           MK+TFLGT +  PT++R    ++++     +  L DCGE TQ +++ T +S   +  + I
Sbjct: 2   MKLTFLGTSSGTPTRHRNVSGLAVQTVLGADWVLIDCGEGTQHRVLQTPLSLNDLAAVCI 61

Query: 59  THLHGDHVLGLPGLLQSIAFQGRKKPLNIYGPAETVKMIEHILGVGYHSIDYPINVHEIS 118
           TH+HGDH  GLPGLL S     R KPL +  P    +  E    +    +  P  V  ++
Sbjct: 62  THVHGDHCYGLPGLLASAGMNKRTKPLKLIAPLPVWQWFEATRAL--TDLHLPYEVEHVN 119

Query: 119 SKTPERIIFTNNYEVFSYPVVHSVPALAY-VFKQVKKPRMDLEKVKKLGIEIGPDLKRLK 177
              P  +       + S+ ++H VP+ AY V  + ++ R+  + ++ +G+  GP  + L+
Sbjct: 120 LDGPSLVYEVPGVCIESHALLHRVPSHAYRVQVETRRVRLKADALRAIGLPPGPAWRALQ 179

Query: 178 DGFNVELNGEIITLNDVTLPPKKGICVGYSGDTIPLKEFAEFLKELKCNTLIHEATFDK- 236
            G +V  NG+++   D T    + +     GD        +  K      L+HEATF + 
Sbjct: 180 TGEDVPFNGDVLRSADYTDAQVEAVAAVMGGDNAEPALLRDACK--SAQLLVHEATFTQD 237

Query: 237 TMERNAKETLHSTATDALNIAKLSGVSTVLLTHISARYDNLNAFENEIVEFKAENPEIHV 296
            +++     +HS+A      A+   V  ++LTH SAR+ N       + E +A     H 
Sbjct: 238 ALDKVGPGPMHSSARLLAEFAQAVEVPNLILTHFSARHQNEEGMAALMAETQACYSG-HA 296

Query: 297 LIAEDLMEYSL 307
            +A DL  Y L
Sbjct: 297 FLANDLDVYEL 307