Pairwise Alignments

Query, 308 a.a., ribonuclease Z from Methanococcus maripaludis S2

Subject, 305 a.a., orf, hypothetical protein (VIMSS) from Escherichia coli BW25113

 Score =  167 bits (424), Expect = 2e-46
 Identities = 100/282 (35%), Positives = 153/282 (54%), Gaps = 11/282 (3%)

Query: 1   MKITFLGTGAAIPTKYRAHPSISLKFD----GEIFLFDCGENTQRQIIFTDVSPMKINNI 56
           M++ FLGT A +PT+ R   +I L         ++LFDCGE TQ Q++ T  +P K++ I
Sbjct: 1   MELIFLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGTQHQLLHTAFNPGKLDKI 60

Query: 57  FITHLHGDHVLGLPGLLQSIAFQGRKKPLNIYGPAETVKMIEHILGVGYHSIDYPINVHE 116
           FI+HLHGDH+ GLPGLL S +  G  +PL IYGP    + +E  L +     DYP+ + E
Sbjct: 61  FISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSWTDYPLEIVE 120

Query: 117 ISSKTPERIIFTNNYEVFSYPVVHSVPALAYVFKQVKKP-RMDLEKVKKLGIEIGPDLKR 175
           I +     I+     +V +YP+ H +    Y  ++  KP  ++ + +K  G+  GP  + 
Sbjct: 121 IGA---GEILDDGLRKVTAYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPLFQE 177

Query: 176 LKDGFNVEL-NGEIITLNDVTLPPKKGICVGYSGDTIPLKEFAEFLKELKCNTLIHEATF 234
           LK G  + L +G  I   D    P  G  +   GDT P     +  K +  + ++HEAT 
Sbjct: 178 LKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGPCDAALDLAKGV--DVMVHEATL 235

Query: 235 DKTMERNAKETLHSTATDALNIAKLSGVSTVLLTHISARYDN 276
           D TME  A    HS+   A  +A+ +GV  +++TH+S+RYD+
Sbjct: 236 DITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDD 277