Pairwise Alignments

Query, 308 a.a., ribonuclease Z from Methanococcus maripaludis S2

Subject, 304 a.a., ribonuclease Z from Erwinia tracheiphila SCR3

 Score =  172 bits (436), Expect = 9e-48
 Identities = 100/280 (35%), Positives = 155/280 (55%), Gaps = 12/280 (4%)

Query: 1   MKITFLGTGAAIPTKYRAHPSISLKFD---GEIFLFDCGENTQRQIIFTDVSPMKINNIF 57
           M++ FLGTGA +P + R   SI+L      G  +LFDCGE TQ QI+ + V P ++  IF
Sbjct: 1   MELLFLGTGAGMPCRLRNVTSIALNLPKTLGGSWLFDCGEGTQHQIMRSPVKPARLEKIF 60

Query: 58  ITHLHGDHVLGLPGLLQSIAFQGRKKPLNIYGPAETVKMIEHILGVGYHSIDYPINVHEI 117
           ITHLHGDH+ GLPGLL S +  G   P+ +YGP      +E  L +    +D+P+ + EI
Sbjct: 61  ITHLHGDHIFGLPGLLTSRSMGGNSDPITLYGPQGIKAFVETTLSLSGSWLDFPLEIVEI 120

Query: 118 SSKTPERIIFTN-NYEVFSYPVVHSVPALAYVFKQVKKP-RMDLEKVKKLGIEIGPDLKR 175
           ++      +FT+ ++ V ++P+ H V    Y  ++  KP R+D E++   GI+ G   ++
Sbjct: 121 TAGD----VFTDEHFRVTAFPLTHPVECYGYRIEEHDKPGRLDAERLLADGIKPGHLFQQ 176

Query: 176 LKDGFNVEL-NGEIITLNDVTLPPKKGICVGYSGDTIPLKEFAEFLKELKCNTLIHEATF 234
            K G  V + +G ++       P  KG+ +   GDT P    AE       + ++HEAT 
Sbjct: 177 FKQGKTVTMEDGRVVDGCHYLGPSIKGLVLAIFGDTSPTPAAAEL--AANADVVVHEATL 234

Query: 235 DKTMERNAKETLHSTATDALNIAKLSGVSTVLLTHISARY 274
           +  ME  A    HS+   A  +AKL+G   +++TH+S+RY
Sbjct: 235 EFAMEEKANGRGHSSTVQAATVAKLAGAKRLIVTHLSSRY 274