Pairwise Alignments

Query, 197 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

Subject, 388 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

 Score = 68.6 bits (166), Expect = 1e-16
 Identities = 51/196 (26%), Positives = 84/196 (42%), Gaps = 31/196 (15%)

Query: 14  GALLCNSEKYAEALECYDKILSYYPDDFLAVFGKGMVFLKLKEYEKALQCFNSVLNMNPS 73
           G  L   +K+ EALE Y+K+L   P D       G  F  +K+YEKA+Q ++  LN +  
Sbjct: 152 GTALVGLKKFDEALEIYEKVLKISPYDTEVWKNIGNAFYTVKKYEKAIQFYDMYLNEHKG 211

Query: 74  YIPAIKNKKQVEEKLKKQES-------------ENYNKFSKLGVENYKQGNFEKSLSYFE 120
                 +K     KL K                +NY  + ++G+  Y   ++E ++ Y E
Sbjct: 212 DFGVTLSKGDALRKLGKTNEALDLYTKVLEKHIQNYEPWCRVGLLYYDTEDYETAIYYLE 271

Query: 121 KAFEINPYSETLRKNIETTRLKLKEILPIRWNNKGVEYYKVKNYQKALECFEKAVKLNPK 180
            A E NP + ++   +  T                  Y K++NY K LE  EKA+  + +
Sbjct: 272 LANERNPLNPSILVKLGRT------------------YVKLRNYNKGLEFMEKALDKDSE 313

Query: 181 FESALKNKTMVQKLIK 196
           +  A   K  +  L++
Sbjct: 314 YAKAWCYKGYILNLLE 329



 Score = 50.8 bits (120), Expect = 3e-11
 Identities = 45/179 (25%), Positives = 79/179 (44%), Gaps = 28/179 (15%)

Query: 19  NSEKYAEALECYDKILSYYPDDFLAVFGKGMVFLKLKEYEKALQCFNSVLNMNPSYIPAI 78
           NS KY +++E ++K L+  P +  A + KG  +  L + + A   +   L++ P+ +  I
Sbjct: 24  NSGKYQKSIEYFNKTLNSEPKNPDAWYFKGNAYHMLGKSKLAQDSYEKALSIRPNDLEII 83

Query: 79  KNKKQVEEKLK---------KQESENYNKFSK-LGVENYKQGNFEKSLSYFEKAFEINPY 128
           K+   +   L+         K  SE+ +K  + LG    K G F +++  +    E  P 
Sbjct: 84  KSYTMLLNSLELFKESVEILKNVSESDDKIIEILGDAYLKTGKFNEAILQYNNILERKP- 142

Query: 129 SETLRKNIETTRLKLKEILPIRWNNKGVEYYKVKNYQKALECFEKAVKLNPKFESALKN 187
                        + KEIL      KG     +K + +ALE +EK +K++P      KN
Sbjct: 143 -------------RYKEILA----KKGTALVGLKKFDEALEIYEKVLKISPYDTEVWKN 184



 Score = 42.7 bits (99), Expect = 8e-09
 Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 18/100 (18%)

Query: 92  ESENYNKFSKLGVENYKQGNFEKSLSYFEKAFEINPYSETLRKNIETTRLKLKEILPIRW 151
           +S++  K  + G E Y  G ++KS+ YF K     P      KN            P  W
Sbjct: 8   KSKDPKKLLETGTEYYNSGKYQKSIEYFNKTLNSEP------KN------------PDAW 49

Query: 152 NNKGVEYYKVKNYQKALECFEKAVKLNPKFESALKNKTMV 191
             KG  Y+ +   + A + +EKA+ + P     +K+ TM+
Sbjct: 50  YFKGNAYHMLGKSKLAQDSYEKALSIRPNDLEIIKSYTML 89



 Score = 40.4 bits (93), Expect = 4e-08
 Identities = 37/173 (21%), Positives = 70/173 (40%), Gaps = 28/173 (16%)

Query: 10  WHSHGALLCNSEKYAEALECYDKILSYYPDDFLAVFGKGMVFLKLKEYEKALQCFNSVLN 69
           W+  G       K   A + Y+K LS  P+D   +    M+   L+ ++++++   +V  
Sbjct: 49  WYFKGNAYHMLGKSKLAQDSYEKALSIRPNDLEIIKSYTMLLNSLELFKESVEILKNVSE 108

Query: 70  MNPSYIPA-----IKNKKQVEEKLK----KQESENYNK-FSKLGVENYKQGNFEKSLSYF 119
            +   I       +K  K  E  L+     +    Y +  +K G        F+++L  +
Sbjct: 109 SDDKIIEILGDAYLKTGKFNEAILQYNNILERKPRYKEILAKKGTALVGLKKFDEALEIY 168

Query: 120 EKAFEINPYSETLRKNIETTRLKLKEILPIRWNNKGVEYYKVKNYQKALECFE 172
           EK  +I+PY   +                  W N G  +Y VK Y+KA++ ++
Sbjct: 169 EKVLKISPYDTEV------------------WKNIGNAFYTVKKYEKAIQFYD 203



 Score = 26.9 bits (58), Expect = 5e-04
 Identities = 15/68 (22%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 10  WHSHGALLCNSEKYAEALECYDKILSYYPDDFLAVFGKGMVFLKLKEYEKALQCFNSVLN 69
           W   G +L   E++ EA++CY K +S   +D         V+  + + + + + + + +N
Sbjct: 318 WCYKGYILNLLERHYEAIDCYKKAISINKNDSKFWMHLSNVYKTIGKEDYSKEAYENAVN 377

Query: 70  M-NPSYIP 76
           + N + +P
Sbjct: 378 LENHNMLP 385