Pairwise Alignments

Query, 197 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

Subject, 409 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

 Score = 83.2 bits (204), Expect = 6e-21
 Identities = 61/223 (27%), Positives = 102/223 (45%), Gaps = 39/223 (17%)

Query: 6   GIQKWHSHGALLC--NSEKYAEALECYDKILSYYPDDFLAVFGKGMVFLKLKEYEKALQC 63
           G  K+  +G  LC    E+Y  A+EC+DK +      + A++ KG+   K K+Y  A+ C
Sbjct: 191 GNLKYSLNGKGLCCEKKEQYTMAVECFDKAVIQDECYYDAIYNKGISCYKSKKYSCAISC 250

Query: 64  FNSVLNMNPS-----------------YIPAIKNKKQVEEKLKKQESENYNKFSKLGVEN 106
           F   L++N S                 Y  A+ N K+  E     +S+N   +S LG+  
Sbjct: 251 FEKALDLNNSNPYCYFYKADSLNRLGEYEKAVLNYKKAIEL----DSKNPIFWSGLGLSY 306

Query: 107 YKQGNFEKSLSYFEKAFEINP----------YSETLRKNIETTRLKLKEILPIR------ 150
                +  S+  +EKA E+NP          Y +   KN   +    ++ L +       
Sbjct: 307 NYLNEYNSSIQSYEKAVELNPEDDISWSNLGYLQYKNKNYNESISYFEKSLDLNSNNKYA 366

Query: 151 WNNKGVEYYKVKNYQKALECFEKAVKLNPKFESALKNKTMVQK 193
           WN  G  Y  +KNY+KAL C++KA++++P +     +K+ + K
Sbjct: 367 WNGLGNSYLLLKNYEKALMCYDKAIEIDPLYNEPKISKSSISK 409



 Score = 73.2 bits (178), Expect = 6e-18
 Identities = 53/204 (25%), Positives = 95/204 (46%), Gaps = 37/204 (18%)

Query: 10  WHSHGALLCNSEKYAEALECYDKILSYYPDDFLAVFGKGMVFLKLKEYEKALQCFNSVLN 69
           W+  G     + +Y +A+ C+DK L+   +   ++ GKG+   K ++Y  A++CF+  + 
Sbjct: 163 WNDLGYCYYQNGEYDKAIGCFDKALTLDGNLKYSLNGKGLCCEKKEQYTMAVECFDKAVI 222

Query: 70  MNPSYIPAIKNKKQVEEKLKKQESENYNKFSKLGVENYKQGNFEKSLSYFEKAFEI---N 126
            +  Y  AI NK                     G+  YK   +  ++S FEKA ++   N
Sbjct: 223 QDECYYDAIYNK---------------------GISCYKSKKYSCAISCFEKALDLNNSN 261

Query: 127 PY-----SETLRK--NIETTRLKLKEIL------PIRWNNKGVEYYKVKNYQKALECFEK 173
           PY     +++L +    E   L  K+ +      PI W+  G+ Y  +  Y  +++ +EK
Sbjct: 262 PYCYFYKADSLNRLGEYEKAVLNYKKAIELDSKNPIFWSGLGLSYNYLNEYNSSIQSYEK 321

Query: 174 AVKLNPKFESALKNKTMVQKLIKN 197
           AV+LNP+ + +  N   +Q   KN
Sbjct: 322 AVELNPEDDISWSNLGYLQYKNKN 345



 Score = 53.5 bits (127), Expect = 5e-12
 Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 33/165 (20%)

Query: 55  KEYEKALQCFNSVLNMNPSYIPAIK--NKKQVEEK-----------LKKQESENYNKFSK 101
           K+YE +++CF+  L ++P    +++   K  +E +           L + E EN      
Sbjct: 38  KDYETSVKCFDKALELDPDNTCSLEYLGKYSMENRNLDMAEIYFGRLIELEPENKCALKS 97

Query: 102 LGVENYKQGNFEKSLSYFEKAFEINP------------------YSETLRKNIETTRLKL 143
           LG  +  Q  ++K+L Y+ K  EI+                   Y E++    ++T    
Sbjct: 98  LGEIHLSQEEYDKALYYYNKLLEIDNSVGKTWFYKGICLKMLGNYDESVEAFDKSTGDY- 156

Query: 144 KEILPIRWNNKGVEYYKVKNYQKALECFEKAVKLNPKFESALKNK 188
            E L + WN+ G  YY+   Y KA+ CF+KA+ L+   + +L  K
Sbjct: 157 -ETLFLTWNDLGYCYYQNGEYDKAIGCFDKALTLDGNLKYSLNGK 200



 Score = 50.8 bits (120), Expect = 3e-11
 Identities = 44/178 (24%), Positives = 79/178 (44%), Gaps = 29/178 (16%)

Query: 30  YDKILSYYPDDFLAVFGKGMVFLKLKEYEKALQCFNSVLNMNPSY----------IPAIK 79
           + +++   P++  A+   G + L  +EY+KAL  +N +L ++ S           +  + 
Sbjct: 81  FGRLIELEPENKCALKSLGEIHLSQEEYDKALYYYNKLLEIDNSVGKTWFYKGICLKMLG 140

Query: 80  NKKQVEEKLKKQESENYNKF---SKLGVENYKQGNFEKSLSYFEKAFEIN---PYSET-- 131
           N  +  E   K   +    F   + LG   Y+ G ++K++  F+KA  ++    YS    
Sbjct: 141 NYDESVEAFDKSTGDYETLFLTWNDLGYCYYQNGEYDKAIGCFDKALTLDGNLKYSLNGK 200

Query: 132 ----LRKNIETTRLKLKEILPIRWN-------NKGVEYYKVKNYQKALECFEKAVKLN 178
                +K   T  ++  +   I+         NKG+  YK K Y  A+ CFEKA+ LN
Sbjct: 201 GLCCEKKEQYTMAVECFDKAVIQDECYYDAIYNKGISCYKSKKYSCAISCFEKALDLN 258



 Score = 29.3 bits (64), Expect = 1e-04
 Identities = 10/25 (40%), Positives = 20/25 (80%)

Query: 155 GVEYYKVKNYQKALECFEKAVKLNP 179
           G + Y  K+Y+ +++CF+KA++L+P
Sbjct: 31  GEQCYLEKDYETSVKCFDKALELDP 55