Pairwise Alignments

Query, 747 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 1434 a.a., putative ATP-dependent DNA helicase lhr from Pseudomonas putida KT2440

 Score = 67.4 bits (163), Expect = 5e-15
 Identities = 80/341 (23%), Positives = 140/341 (41%), Gaps = 69/341 (20%)

Query: 32  KNFLICIPTASGKTLIGEMALLNHILDENKNLTGKKG-----LFIVPLKALANE------ 80
           ++ L+  PT SGKTL   +A+L+ +L E     G+       +++ PLKAL+N+      
Sbjct: 44  QSMLLAAPTGSGKTLSAFLAVLDELLREGMKHQGELPAQTLVIYVSPLKALSNDIRLNLQ 103

Query: 81  -KFDEFKEKYEKYG-----IKVGLSIGDFDTKENLSKF----HIIITTSEKLDSLMRHEV 130
              +   +   + G     I   +  GD   KE  +      HI++TT E L  LM    
Sbjct: 104 APLEGISQAIAEQGLNAPRITTAVRTGDTPQKERAAMRKLAPHILVTTPESLYVLMGSAS 163

Query: 131 --EWINDVSLAVIDEIHLIGDNDRGGTLEVILTKLKNL---NAQIVGLSATIGNPEELSN 185
             E +  V   ++DEIH +  N RG  L + L +L+ L     + +GLSAT    E +  
Sbjct: 164 GREGLAHVHTVIVDEIHALAGNKRGAHLALTLERLQALCKKPLRRIGLSATQRPVERV-- 221

Query: 186 WLNAKLIVDEWRPVELKKGIYFENELEFVKSPAKKIKQVSKNNITDLIVDSV----EEKG 241
              A+ +V   RP  +    +       ++ P   +  V   ++  L+ D +     E  
Sbjct: 222 ---AQFLVGSGRPCAIVDIGHARKRDLAIEVPPVPLGAVMAIDVWGLVYDRLATLAREHR 278

Query: 242 SCLIFCNSKRNAVGEAKKHNLTKYLTRTEQHELNKLSEEILSILDTPTETCKALSECIKK 301
           + L+F N++R A              R  +H  ++L                      K+
Sbjct: 279 TTLVFVNTRRLA-------------ERITRHLSDRLG---------------------KE 304

Query: 302 GIAFHHAGLTYQHRKIVEDGFRNRLIKVICCTPTLSAGLNL 342
            +A HH  L+   R   E   ++  ++V+  T +L  G+++
Sbjct: 305 AVAAHHGSLSKALRLDAEQRLKSGQLQVLVATASLELGIDI 345