Pairwise Alignments

Query, 747 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 1415 a.a., DEAD-box ATP-dependent RNA helicase CshB from Pseudomonas lactucae CFBP13502

 Score = 64.7 bits (156), Expect = 3e-14
 Identities = 84/352 (23%), Positives = 143/352 (40%), Gaps = 81/352 (23%)

Query: 27  LFDKTKNFLICIPTASGKTLIGEMALLNHILDENKNLTGKKG-----LFIVPLKALANE- 80
           L  + ++ LI  PT SGKTL   +A+L+ ++ +    TG+       +++ PLKAL+N+ 
Sbjct: 39  LIRQRRSTLIAAPTGSGKTLTAFLAVLDDLVHQGLANTGQLPDETLVVYVSPLKALSNDI 98

Query: 81  ------KFDEFKEKYEKYG-----IKVGLSIGDFDTKENLSKF----HIIITTSEKLDSL 125
                       E+    G     I+  +  GD   K+         HI++TT E L  L
Sbjct: 99  QINLQNPLAGITEQLHAQGLPPVAIRTAVRTGDTPQKDRAQMRKRAPHILVTTPESLYVL 158

Query: 126 MRHEV--EWINDVSLAVIDEIHLIGDNDRGGTLEVILTKLKNLNA---QIVGLSATIGNP 180
           +  +   + +      ++DEIH I  + RG  L + L +L+ L A     +GLSAT    
Sbjct: 159 LGSDSGRQMLASTRTVIVDEIHAIAASKRGSHLALSLERLQGLCAAPLTRIGLSATQKPI 218

Query: 181 EELSNWL----NAKLIVD--EWRPVELKKGIYFENELEFVKSPAKKIKQVSKNNITDLIV 234
           + +S +L        IVD    RP +L            ++ P   +  V  N++ +L+ 
Sbjct: 219 DAVSRFLVGTDRTCAIVDIGHARPRDLA-----------IEVPPVPLSAVMANDVWELVY 267

Query: 235 DSV----EEKGSCLIFCNSKRNAVGEAKKHNLTKYLTRTEQHELNKLSEEILSILDTPTE 290
           D +     E  + LIF N++R A              R  +H   +L             
Sbjct: 268 DRLATLAREHRTTLIFVNTRRLA-------------ERLARHLSERLG------------ 302

Query: 291 TCKALSECIKKGIAFHHAGLTYQHRKIVEDGFRNRLIKVICCTPTLSAGLNL 342
                    K  +A HH  L  + R   E   +   ++V+  T +L  G+++
Sbjct: 303 ---------KTAVAAHHGSLAKELRLDAEQRLKAGELQVLIATASLELGIDI 345