Pairwise Alignments

Query, 747 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

Subject, 527 a.a., ATP-dependent RNA helicase RhlE from Azospirillum sp. SherDot2

 Score = 51.6 bits (122), Expect = 1e-10
 Identities = 63/255 (24%), Positives = 113/255 (44%), Gaps = 17/255 (6%)

Query: 3   VLDILKENKITELRPPQKKVIDEGLFDKTKNFLICIPTASGKTLIGEMALLNHILDENKN 62
           VL  +++   T+  P Q++ I   L  + ++ L C  T +GKT    + +++ +      
Sbjct: 12  VLRAIEDKGYTQPTPIQEQAIPCVL--QRRDVLGCAQTGTGKTASFTLPMIDILASGRAR 69

Query: 63  LTGKKGLFIVPLKALANEKFDEFKEKYEKYG-IKVGLSIGDFDTKENLSKFH----IIIT 117
               + L + P + LA +  + F E Y KY  + + L IG     E + K      ++I 
Sbjct: 70  ARMPRSLILEPTRELAAQVSESF-ETYGKYHKLSMALLIGGETFTEQVKKLDRGVDVLIA 128

Query: 118 TSEKLDSLMRHEVEWINDVSLAVIDEIHLIGDNDRGGTLEVILTKLKNLNAQIVGLSATI 177
           T  +L  L       +ND+ + VIDE   + D      +E I++KL   N Q +  SAT+
Sbjct: 129 TPGRLIDLFERGNIMLNDIKVFVIDEADRMLDMGFIPDIERIVSKLPK-NRQTLFFSATM 187

Query: 178 GNPEELSNWLNAKLIVDEWRPVELKKGIYFENELEFVKSPAKKIKQVSKNNITDLIVDSV 237
             P E+    +A L     +P+E+       +  E V      + ++ K      ++ + 
Sbjct: 188 --PPEIRRLADAFLT----QPLEISVAPP-ASPAETVTQALSLVHEMDKRKALRHLLQT- 239

Query: 238 EEKGSCLIFCNSKRN 252
           E+  +  IFCN KR+
Sbjct: 240 EDVKNAFIFCNRKRD 254