Pairwise Alignments

Query, 388 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

Subject, 284 a.a., Type IV pilus biogenesis protein PilF from Variovorax sp. SCN45

 Score = 47.4 bits (111), Expect = 5e-10
 Identities = 21/75 (28%), Positives = 41/75 (54%)

Query: 16  LETGTEYYNSGKYQKSIEYFNKTLNSEPKNPDAWYFKGNAYHMLGKSKLAQDSYEKALSI 75
           +E  + Y+  G+   +++   + L ++P N DA+  +G  Y  L  + +A+DS+ +A++I
Sbjct: 70  MELASGYFEQGQTNVALDEIKQALAADPNNSDAYNLRGLVYMRLDDAGMAEDSFRRAIAI 129

Query: 76  RPNDLEIIKSYTMLL 90
            P D     +Y  LL
Sbjct: 130 NPRDPNTRHNYGWLL 144



 Score = 33.1 bits (74), Expect = 1e-05
 Identities = 33/160 (20%), Positives = 59/160 (36%), Gaps = 2/160 (1%)

Query: 117 LGDAYLKTGKFNEAILQYNNILERKPRYKEILAKKGTALVGLKKFDEALEIYEKVLKISP 176
           L   Y + G+ N A+ +    L   P   +    +G   + L     A + + + + I+P
Sbjct: 72  LASGYFEQGQTNVALDEIKQALAADPNNSDAYNLRGLVYMRLDDAGMAEDSFRRAIAINP 131

Query: 177 YDTEVWKNIGNAFYTVKKY-EKAIQFYDMYLNEHKGDFGVTL-SKGDALRKLGKTNEALD 234
            D     N G       +Y + A QF +        D   TL ++G    K G+  +A  
Sbjct: 132 RDPNTRHNYGWLLCQQNRYGDAATQFNEALAVPSYADRAKTLMTRGVCELKAGQRAQAER 191

Query: 235 LYTKVLEKHIQNYEPWCRVGLLYYDTEDYETAIYYLELAN 274
              +  E    N      + L+    E++  A +Y+   N
Sbjct: 192 TLQQAYEIDASNPVVGFNLALVLAQREEWSRAQFYIRRVN 231



 Score = 25.0 bits (53), Expect = 0.003
 Identities = 21/82 (25%), Positives = 31/82 (37%)

Query: 227 GKTNEALDLYTKVLEKHIQNYEPWCRVGLLYYDTEDYETAIYYLELANERNPLNPSILVK 286
           G+TN ALD   + L     N + +   GL+Y   +D   A      A   NP +P+    
Sbjct: 80  GQTNVALDEIKQALAADPNNSDAYNLRGLVYMRLDDAGMAEDSFRRAIAINPRDPNTRHN 139

Query: 287 LGRTYVKLRNYNKGLEFMEKAL 308
            G    +   Y        +AL
Sbjct: 140 YGWLLCQQNRYGDAATQFNEAL 161