Pairwise Alignments

Query, 388 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

Subject, 829 a.a., TPR domain protein, putative component of TonB system from Variovorax sp. SCN45

 Score = 58.2 bits (139), Expect = 9e-13
 Identities = 69/330 (20%), Positives = 125/330 (37%), Gaps = 23/330 (6%)

Query: 11  DPKKLLETGTEYYNSGKYQKSIEYFNKTLNSEPKNPDAWYFKGNAYHMLGKSKLAQDSYE 70
           +  +LLE G   +  G++ +++  +   L+  P++ DA +  G A +  G+ KLA +   
Sbjct: 16  EASRLLEQGLTQHRMGRFTEALRIYENLLSQFPEHADALHLTGEALYRQGRPKLALNYVN 75

Query: 71  KALSIRPNDL------EIIKSYTMLLNSLELFKESVEILKNVSESDDKIIEILGDAYLKT 124
           +A++  P+         I     +L  + +  + +++ L N  E+       L   Y + 
Sbjct: 76  RAIAKSPHHFYFNTRATIFMHMGLLAEAQQDLRRAIKALPNYPEA----YVNLSAVYRQQ 131

Query: 125 GKFNEAILQYNNILERKPRYKEILAKKGTALVGLKKFDEALEIYEKVLKISPYDTEVWKN 184
            KF +A           P+        G   +   + +EA+E + + LK+        KN
Sbjct: 132 KKFRQAREAAGEATRLAPQSPAAWNNAGAIDMEQDRLEEAVEQFRQALKLDSGYIAAHKN 191

Query: 185 IGNAFYTVKKYEKAIQFYDMYLNEHKGDFGVTLSKGDALRKLGKTNEAL-----DLYTKV 239
           IG      K +  A+   +    +   DF        AL   G+  EA+      +    
Sbjct: 192 IGKIRAHQKDWAGALTSLEQAQTD-PPDFEAAYLLSRALIACGRNEEAIAPMQRAMRHST 250

Query: 240 LEKHIQNYEPWCRVGLLYYDTEDYETAIYYLE-------LANERNPLNPSILVKLGRTYV 292
           +E   +       V  LY      E A    +       LA E  P   ++L  LG T  
Sbjct: 251 VEVRARALSDPEAVAALYGVCAALEGAAMRFDESEELYKLALESMPEQEALLNNLGATNF 310

Query: 293 KLRNYNKGLEFMEKALDKDSEYAKAWCYKG 322
           +   Y+  +E ++KAL+       A C  G
Sbjct: 311 RQGRYDAAIEVLKKALELHPRQVLARCNLG 340



 Score = 34.7 bits (78), Expect = 1e-05
 Identities = 20/83 (24%), Positives = 38/83 (45%)

Query: 126 KFNEAILQYNNILERKPRYKEILAKKGTALVGLKKFDEALEIYEKVLKISPYDTEVWKNI 185
           +F+E+   Y   LE  P  + +L   G       ++D A+E+ +K L++ P       N+
Sbjct: 280 RFDESEELYKLALESMPEQEALLNNLGATNFRQGRYDAAIEVLKKALELHPRQVLARCNL 339

Query: 186 GNAFYTVKKYEKAIQFYDMYLNE 208
           G  +    + E AI  ++  L +
Sbjct: 340 GVTYVMAGQSEAAIAEFEQCLRD 362



 Score = 33.9 bits (76), Expect = 2e-05
 Identities = 32/158 (20%), Positives = 66/158 (41%), Gaps = 13/158 (8%)

Query: 194 KYEKAIQFYDMYLNEHKGDFGVTLSKGDALRKLGKTNEALDLYTKVLEKHIQNY------ 247
           ++ +A++ Y+  L++           G+AL + G+   AL+   + + K   ++      
Sbjct: 32  RFTEALRIYENLLSQFPEHADALHLTGEALYRQGRPKLALNYVNRAIAKSPHHFYFNTRA 91

Query: 248 EPWCRVGLLYYDTEDYETAIYYLELANERNPLNPSILVKLGRTYVKLRNYNKGLEFMEKA 307
             +  +GLL    +D   AI  L       P  P   V L   Y + + + +  E   +A
Sbjct: 92  TIFMHMGLLAEAQQDLRRAIKAL-------PNYPEAYVNLSAVYRQQKKFRQAREAAGEA 144

Query: 308 LDKDSEYAKAWCYKGYILNLLERHYEAIDCYKKAISIN 345
                +   AW   G I    +R  EA++ +++A+ ++
Sbjct: 145 TRLAPQSPAAWNNAGAIDMEQDRLEEAVEQFRQALKLD 182



 Score = 31.2 bits (69), Expect = 1e-04
 Identities = 18/60 (30%), Positives = 27/60 (45%)

Query: 19  GTEYYNSGKYQKSIEYFNKTLNSEPKNPDAWYFKGNAYHMLGKSKLAQDSYEKALSIRPN 78
           G   +  G+Y  +IE   K L   P+   A    G  Y M G+S+ A   +E+ L   P+
Sbjct: 306 GATNFRQGRYDAAIEVLKKALELHPRQVLARCNLGVTYVMAGQSEAAIAEFEQCLRDDPD 365



 Score = 29.3 bits (64), Expect = 4e-04
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 3/84 (3%)

Query: 96  FKESVEILKNVSES---DDKIIEILGDAYLKTGKFNEAILQYNNILERKPRYKEILAKKG 152
           F ES E+ K   ES    + ++  LG    + G+++ AI      LE  PR        G
Sbjct: 281 FDESEELYKLALESMPEQEALLNNLGATNFRQGRYDAAIEVLKKALELHPRQVLARCNLG 340

Query: 153 TALVGLKKFDEALEIYEKVLKISP 176
              V   + + A+  +E+ L+  P
Sbjct: 341 VTYVMAGQSEAAIAEFEQCLRDDP 364