Pairwise Alignments

Query, 388 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

Subject, 678 a.a., TPR domain protein from Sphingobium sp. HT1-2

 Score = 41.6 bits (96), Expect = 7e-08
 Identities = 45/227 (19%), Positives = 80/227 (35%), Gaps = 37/227 (16%)

Query: 12  PKKLLETGTEYYNSGKYQKSIEYFNKTLNSEPKNPDAWYFKGNAYHMLGKSKLAQDSYEK 71
           P  L E       +G  +++I         +P  P  W+         G+   A  +   
Sbjct: 80  PAILWELAQAAREAGDQRQAIGALESLTRQQPGVPGGWFLLAGLLRASGRDSDAWRADLS 139

Query: 72  ALSIRPNDLEIIKSYTMLLNSLELFKESVEILKNVSE--SDDKIIEILGDAYLKTGKFNE 129
            +     D +++++  M +N   L   +  +         D   I ++G+   + G  N 
Sbjct: 140 GVHAASRDRDLLEA-AMAMNEGRLDDAAALLTARADRLPDDPAGIRLMGEVQWRRGDMNA 198

Query: 130 AI-----------------------LQYNNILERKPRYKEILAK-----------KGTAL 155
           A+                       L  NN L     + E LA+           + + L
Sbjct: 199 ALAHVERAVALAPGFDLARDFLIRLLLQNNRLSEALAHAETLARSPIHNPGYDLIRASVL 258

Query: 156 VGLKKFDEALEIYEKVLKISPYDTEVWKNIGNAFYTVKKYEKAIQFY 202
           V L   D A  IYE++L   P   +VW+N+G+A  T+ +   A+  Y
Sbjct: 259 VRLGDQDAARAIYERLLADRPDQPQVWQNLGHALKTLGRQADAVHAY 305



 Score = 32.0 bits (71), Expect = 5e-05
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 2/88 (2%)

Query: 276 RNPL-NPSILVKLGRTYVKLRNYNKGLEFMEKALDKDSEYAKAWCYKGYILNLLERHYEA 334
           R+P+ NP   +      V+L + +      E+ L    +  + W   G+ L  L R  +A
Sbjct: 242 RSPIHNPGYDLIRASVLVRLGDQDAARAIYERLLADRPDQPQVWQNLGHALKTLGRQADA 301

Query: 335 IDCYKKAISINKNDSKFWMHLSNVYKTI 362
           +  Y++A+       + W  L+N+ KT+
Sbjct: 302 VHAYRQAVHHRPTMGEAWWSLANL-KTV 328



 Score = 28.5 bits (62), Expect = 6e-04
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 35  FNKTLNSEPKNPDAWYFKGNAYHMLGKSKLAQDSYEKALSIRP 77
           + + L   P  P  W   G+A   LG+   A  +Y +A+  RP
Sbjct: 271 YERLLADRPDQPQVWQNLGHALKTLGRQADAVHAYRQAVHHRP 313



 Score = 27.7 bits (60), Expect = 0.001
 Identities = 10/40 (25%), Positives = 23/40 (57%)

Query: 338 YKKAISINKNDSKFWMHLSNVYKTIGKEDYSKEAYENAVN 377
           Y++ ++   +  + W +L +  KT+G++  +  AY  AV+
Sbjct: 271 YERLLADRPDQPQVWQNLGHALKTLGRQADAVHAYRQAVH 310