Pairwise Alignments

Query, 388 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

Subject, 409 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

 Score =  110 bits (276), Expect = 5e-29
 Identities = 97/366 (26%), Positives = 158/366 (43%), Gaps = 37/366 (10%)

Query: 17  ETGTEYYNSGKYQKSIEYFNKTLNSEPKNPDAWYFKGN---------------------- 54
           E G + Y    Y+ S++ F+K L  +P N  +  + G                       
Sbjct: 29  EMGEQCYLEKDYETSVKCFDKALELDPDNTCSLEYLGKYSMENRNLDMAEIYFGRLIELE 88

Query: 55  -----AYHMLGKSKLAQDSYEKALSIRPNDLEIIKSYT-------MLLNSLELFKESVEI 102
                A   LG+  L+Q+ Y+KAL      LEI  S         + L  L  + ESVE 
Sbjct: 89  PENKCALKSLGEIHLSQEEYDKALYYYNKLLEIDNSVGKTWFYKGICLKMLGNYDESVEA 148

Query: 103 LKNVSESDDKII---EILGDAYLKTGKFNEAILQYNNILERKPRYKEILAKKGTALVGLK 159
               +   + +      LG  Y + G++++AI  ++  L      K  L  KG      +
Sbjct: 149 FDKSTGDYETLFLTWNDLGYCYYQNGEYDKAIGCFDKALTLDGNLKYSLNGKGLCCEKKE 208

Query: 160 KFDEALEIYEKVLKISPYDTEVWKNIGNAFYTVKKYEKAIQFYDMYLNEHKGDFGVTLSK 219
           ++  A+E ++K +       +   N G + Y  KKY  AI  ++  L+ +  +      K
Sbjct: 209 QYTMAVECFDKAVIQDECYYDAIYNKGISCYKSKKYSCAISCFEKALDLNNSNPYCYFYK 268

Query: 220 GDALRKLGKTNEALDLYTKVLEKHIQNYEPWCRVGLLYYDTEDYETAIYYLELANERNPL 279
            D+L +LG+  +A+  Y K +E   +N   W  +GL Y    +Y ++I   E A E NP 
Sbjct: 269 ADSLNRLGEYEKAVLNYKKAIELDSKNPIFWSGLGLSYNYLNEYNSSIQSYEKAVELNPE 328

Query: 280 NPSILVKLGRTYVKLRNYNKGLEFMEKALDKDSEYAKAWCYKGYILNLLERHYEAIDCYK 339
           +      LG    K +NYN+ + + EK+LD +S    AW   G    LL+ + +A+ CY 
Sbjct: 329 DDISWSNLGYLQYKNKNYNESISYFEKSLDLNSNNKYAWNGLGNSYLLLKNYEKALMCYD 388

Query: 340 KAISIN 345
           KAI I+
Sbjct: 389 KAIEID 394



 Score = 98.2 bits (243), Expect = 4e-25
 Identities = 78/320 (24%), Positives = 149/320 (46%), Gaps = 9/320 (2%)

Query: 69  YEKALSIRPND---LEIIKSYTMLLNSLELFKESVEILKNVSESDDKIIEILGDAYLKTG 125
           ++KAL + P++   LE +  Y+M   +L++ +     L  +   +   ++ LG+ +L   
Sbjct: 47  FDKALELDPDNTCSLEYLGKYSMENRNLDMAEIYFGRLIELEPENKCALKSLGEIHLSQE 106

Query: 126 KFNEAILQYNNILERKPRYKEILAKKGTALVGLKKFDEALEIYEKVLKISPYDTE--VWK 183
           ++++A+  YN +LE      +    KG  L  L  +DE++E ++K      Y+T    W 
Sbjct: 107 EYDKALYYYNKLLEIDNSVGKTWFYKGICLKMLGNYDESVEAFDK--STGDYETLFLTWN 164

Query: 184 NIGNAFYTVKKYEKAIQFYDMYLNEHKGDFGVTLS-KGDALRKLGKTNEALDLYTKVLEK 242
           ++G  +Y   +Y+KAI  +D  L    G+   +L+ KG    K  +   A++ + K + +
Sbjct: 165 DLGYCYYQNGEYDKAIGCFDKALTLD-GNLKYSLNGKGLCCEKKEQYTMAVECFDKAVIQ 223

Query: 243 HIQNYEPWCRVGLLYYDTEDYETAIYYLELANERNPLNPSILVKLGRTYVKLRNYNKGLE 302
               Y+     G+  Y ++ Y  AI   E A + N  NP        +  +L  Y K + 
Sbjct: 224 DECYYDAIYNKGISCYKSKKYSCAISCFEKALDLNNSNPYCYFYKADSLNRLGEYEKAVL 283

Query: 303 FMEKALDKDSEYAKAWCYKGYILNLLERHYEAIDCYKKAISINKNDSKFWMHLSNVYKTI 362
             +KA++ DS+    W   G   N L  +  +I  Y+KA+ +N  D   W +L  +    
Sbjct: 284 NYKKAIELDSKNPIFWSGLGLSYNYLNEYNSSIQSYEKAVELNPEDDISWSNLGYLQYKN 343

Query: 363 GKEDYSKEAYENAVNLENHN 382
              + S   +E +++L ++N
Sbjct: 344 KNYNESISYFEKSLDLNSNN 363



 Score = 62.0 bits (149), Expect = 3e-14
 Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 3/165 (1%)

Query: 19  GTEYYNSGKYQKSIEYFNKTLNSEPKNPDAWYFKGNAYHMLGKSKLAQDSYEKALSIRPN 78
           G   Y S KY  +I  F K L+    NP  +++K ++ + LG+ + A  +Y+KA+ +   
Sbjct: 235 GISCYKSKKYSCAISCFEKALDLNNSNPYCYFYKADSLNRLGEYEKAVLNYKKAIELDSK 294

Query: 79  DLEIIKSYTMLLNSLELFKESVEILKNVSE---SDDKIIEILGDAYLKTGKFNEAILQYN 135
           +        +  N L  +  S++  +   E    DD     LG    K   +NE+I  + 
Sbjct: 295 NPIFWSGLGLSYNYLNEYNSSIQSYEKAVELNPEDDISWSNLGYLQYKNKNYNESISYFE 354

Query: 136 NILERKPRYKEILAKKGTALVGLKKFDEALEIYEKVLKISPYDTE 180
             L+     K      G + + LK +++AL  Y+K ++I P   E
Sbjct: 355 KSLDLNSNNKYAWNGLGNSYLLLKNYEKALMCYDKAIEIDPLYNE 399



 Score = 48.9 bits (115), Expect = 3e-10
 Identities = 37/166 (22%), Positives = 64/166 (38%), Gaps = 34/166 (20%)

Query: 250 WCRVGLLYYDTEDYETAI----------------------YYLELAN------------E 275
           +  +G   Y  +DYET++                      Y +E  N            E
Sbjct: 27  YAEMGEQCYLEKDYETSVKCFDKALELDPDNTCSLEYLGKYSMENRNLDMAEIYFGRLIE 86

Query: 276 RNPLNPSILVKLGRTYVKLRNYNKGLEFMEKALDKDSEYAKAWCYKGYILNLLERHYEAI 335
             P N   L  LG  ++    Y+K L +  K L+ D+   K W YKG  L +L  + E++
Sbjct: 87  LEPENKCALKSLGEIHLSQEEYDKALYYYNKLLEIDNSVGKTWFYKGICLKMLGNYDESV 146

Query: 336 DCYKKAISINKNDSKFWMHLSNVYKTIGKEDYSKEAYENAVNLENH 381
           + + K+    +     W  L   Y   G+ D +   ++ A+ L+ +
Sbjct: 147 EAFDKSTGDYETLFLTWNDLGYCYYQNGEYDKAIGCFDKALTLDGN 192



 Score = 43.9 bits (102), Expect = 8e-09
 Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 23  YNSGKYQKSIEYFNKTLNSEPKNPDAWYFKGNAYHMLGKSKLAQDSYEKALSIRP--NDL 80
           Y +  Y +SI YF K+L+    N  AW   GN+Y +L   + A   Y+KA+ I P  N+ 
Sbjct: 341 YKNKNYNESISYFEKSLDLNSNNKYAWNGLGNSYLLLKNYEKALMCYDKAIEIDPLYNEP 400

Query: 81  EIIKS 85
           +I KS
Sbjct: 401 KISKS 405