Pairwise Alignments

Query, 388 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

Subject, 548 a.a., tetratricopeptide repeat protein from Magnetospirillum magneticum AMB-1

 Score = 48.5 bits (114), Expect = 5e-10
 Identities = 36/171 (21%), Positives = 70/171 (40%), Gaps = 3/171 (1%)

Query: 19  GTEYYNSGKYQKSIEYFNKTLNSEPKNPDAWYFKGNAYHMLGKSKLAQDSYEKALSIRPN 78
           G+  +  G    + +   K +  +P    A    G A   L +   A  ++ K  + RP+
Sbjct: 48  GSVAFRRGDPAGAADLLAKVVKQDPGRIQAVITLGEAQLALSRFSDAAANFRKVAAARPD 107

Query: 79  DLEIIKSYTMLLNSLELFKESVEILKNVSESDDKII---EILGDAYLKTGKFNEAILQYN 135
           D     +  + L  L    E+  +L+   + D  +     +LGD     G+ +EA+    
Sbjct: 108 DPVPHYNLGLALRGLGRLDEAAAVLERCRDMDPSVPAPWNVLGDIRRAQGRLDEAVTCLE 167

Query: 136 NILERKPRYKEILAKKGTALVGLKKFDEALEIYEKVLKISPYDTEVWKNIG 186
             ++  P +       G AL    + +EA+ + E+ L + P D E+  ++G
Sbjct: 168 RAIQLDPGHSMAYNNLGVALQAQDRTEEAISVLERGLALQPDDPELHYSLG 218



 Score = 43.9 bits (102), Expect = 1e-08
 Identities = 43/231 (18%), Positives = 90/231 (38%), Gaps = 3/231 (1%)

Query: 13  KKLLETGTEYYNSGKYQKSIEYFNKTLNSEPKNPDAWYFKGNAYHMLGKSKLAQDSYEKA 72
           + + +   + +N G  + +     + L  + +N  A +  G+     G    A D   K 
Sbjct: 8   QSMFQRAVQAFNGGNLEMAAAECERMLGIDRRNTAAMHILGSVAFRRGDPAGAADLLAKV 67

Query: 73  LSIRPNDLEIIKSYTMLLNSLELFKESVEILKNVSES--DDKIIEI-LGDAYLKTGKFNE 129
           +   P  ++ + +      +L  F ++    + V+ +  DD +    LG A    G+ +E
Sbjct: 68  VKQDPGRIQAVITLGEAQLALSRFSDAAANFRKVAAARPDDPVPHYNLGLALRGLGRLDE 127

Query: 130 AILQYNNILERKPRYKEILAKKGTALVGLKKFDEALEIYEKVLKISPYDTEVWKNIGNAF 189
           A        +  P         G       + DEA+   E+ +++ P  +  + N+G A 
Sbjct: 128 AAAVLERCRDMDPSVPAPWNVLGDIRRAQGRLDEAVTCLERAIQLDPGHSMAYNNLGVAL 187

Query: 190 YTVKKYEKAIQFYDMYLNEHKGDFGVTLSKGDALRKLGKTNEALDLYTKVL 240
               + E+AI   +  L     D  +  S G +L++  +T +A   Y + +
Sbjct: 188 QAQDRTEEAISVLERGLALQPDDPELHYSLGCSLQEATRTADATASYRRAI 238



 Score = 37.0 bits (84), Expect = 1e-06
 Identities = 38/210 (18%), Positives = 81/210 (38%)

Query: 169 EKVLKISPYDTEVWKNIGNAFYTVKKYEKAIQFYDMYLNEHKGDFGVTLSKGDALRKLGK 228
           E++L I   +T     +G+  +       A       + +  G     ++ G+A   L +
Sbjct: 31  ERMLGIDRRNTAAMHILGSVAFRRGDPAGAADLLAKVVKQDPGRIQAVITLGEAQLALSR 90

Query: 229 TNEALDLYTKVLEKHIQNYEPWCRVGLLYYDTEDYETAIYYLELANERNPLNPSILVKLG 288
            ++A   + KV      +  P   +GL        + A   LE   + +P  P+    LG
Sbjct: 91  FSDAAANFRKVAAARPDDPVPHYNLGLALRGLGRLDEAAAVLERCRDMDPSVPAPWNVLG 150

Query: 289 RTYVKLRNYNKGLEFMEKALDKDSEYAKAWCYKGYILNLLERHYEAIDCYKKAISINKND 348
                    ++ +  +E+A+  D  ++ A+   G  L   +R  EAI   ++ +++  +D
Sbjct: 151 DIRRAQGRLDEAVTCLERAIQLDPGHSMAYNNLGVALQAQDRTEEAISVLERGLALQPDD 210

Query: 349 SKFWMHLSNVYKTIGKEDYSKEAYENAVNL 378
            +    L    +   +   +  +Y  A+ L
Sbjct: 211 PELHYSLGCSLQEATRTADATASYRRAIAL 240



 Score = 31.6 bits (70), Expect = 6e-05
 Identities = 38/194 (19%), Positives = 74/194 (38%)

Query: 164 ALEIYEKVLKISPYDTEVWKNIGNAFYTVKKYEKAIQFYDMYLNEHKGDFGVTLSKGDAL 223
           A ++  KV+K  P   +    +G A   + ++  A   +         D     + G AL
Sbjct: 60  AADLLAKVVKQDPGRIQAVITLGEAQLALSRFSDAAANFRKVAAARPDDPVPHYNLGLAL 119

Query: 224 RKLGKTNEALDLYTKVLEKHIQNYEPWCRVGLLYYDTEDYETAIYYLELANERNPLNPSI 283
           R LG+ +EA  +  +  +       PW  +G +       + A+  LE A + +P +   
Sbjct: 120 RGLGRLDEAAAVLERCRDMDPSVPAPWNVLGDIRRAQGRLDEAVTCLERAIQLDPGHSMA 179

Query: 284 LVKLGRTYVKLRNYNKGLEFMEKALDKDSEYAKAWCYKGYILNLLERHYEAIDCYKKAIS 343
              LG          + +  +E+ L    +  +     G  L    R  +A   Y++AI+
Sbjct: 180 YNNLGVALQAQDRTEEAISVLERGLALQPDDPELHYSLGCSLQEATRTADATASYRRAIA 239

Query: 344 INKNDSKFWMHLSN 357
           +  +      +LS+
Sbjct: 240 LRPDYGAAHWNLSH 253



 Score = 26.6 bits (57), Expect = 0.002
 Identities = 12/50 (24%), Positives = 27/50 (54%)

Query: 29  QKSIEYFNKTLNSEPKNPDAWYFKGNAYHMLGKSKLAQDSYEKALSIRPN 78
           +++I    + L  +P +P+  Y  G +     ++  A  SY +A+++RP+
Sbjct: 194 EEAISVLERGLALQPDDPELHYSLGCSLQEATRTADATASYRRAIALRPD 243