Pairwise Alignments

Query, 388 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

Subject, 484 a.a., hypothetical protein from Azospirillum sp. SherDot2

 Score = 42.4 bits (98), Expect = 3e-08
 Identities = 39/158 (24%), Positives = 66/158 (41%), Gaps = 1/158 (0%)

Query: 121 YLKTGKFNEAILQYNNILERKPRYKEILAKKGTALVGLKKFDEALEIYEKVLKISPYDTE 180
           +LK+G+  E    Y  IL+  P   E L + G         D AL++  + ++ +P D +
Sbjct: 20  HLKSGRLAEGEDLYALILDADPGNAEALHRMGFIAGRRGDMDRALDLLTRSVERAP-DAD 78

Query: 181 VWKNIGNAFYTVKKYEKAIQFYDMYLNEHKGDFGVTLSKGDALRKLGKTNEALDLYTKVL 240
              N+G   +   + E+AI  Y   L              +AL+  G+  EAL     +L
Sbjct: 79  ALFNLGTVHHRALRTEEAIVTYRRSLALRPDFPDCEYHLSEALQGAGRLEEALAALDILL 138

Query: 241 EKHIQNYEPWCRVGLLYYDTEDYETAIYYLELANERNP 278
            +H      W + G +  D      A+++ E+A   NP
Sbjct: 139 GRHPHFPAGWRQHGDIAADLGRPGAAVHFYEMALALNP 176



 Score = 38.9 bits (89), Expect = 3e-07
 Identities = 33/155 (21%), Positives = 62/155 (40%), Gaps = 2/155 (1%)

Query: 60  GKSKLAQDSYEKALSIRPNDLEIIKSYTMLLNSLELFKESVEILKNVSES--DDKIIEIL 117
           G+    +D Y   L   P + E +     +         ++++L    E   D   +  L
Sbjct: 24  GRLAEGEDLYALILDADPGNAEALHRMGFIAGRRGDMDRALDLLTRSVERAPDADALFNL 83

Query: 118 GDAYLKTGKFNEAILQYNNILERKPRYKEILAKKGTALVGLKKFDEALEIYEKVLKISPY 177
           G  + +  +  EAI+ Y   L  +P + +       AL G  + +EAL   + +L   P+
Sbjct: 84  GTVHHRALRTEEAIVTYRRSLALRPDFPDCEYHLSEALQGAGRLEEALAALDILLGRHPH 143

Query: 178 DTEVWKNIGNAFYTVKKYEKAIQFYDMYLNEHKGD 212
               W+  G+    + +   A+ FY+M L  +  D
Sbjct: 144 FPAGWRQHGDIAADLGRPGAAVHFYEMALALNPAD 178



 Score = 32.7 bits (73), Expect = 2e-05
 Identities = 32/167 (19%), Positives = 67/167 (40%), Gaps = 2/167 (1%)

Query: 16  LETGTEYYNSGKYQKSIEYFNKTLNSEPKNPDAWYFKGNAYHMLGKSKLAQDSYEKALSI 75
           L    ++  SG+  +  + +   L+++P N +A +  G      G    A D   +++  
Sbjct: 14  LAIALDHLKSGRLAEGEDLYALILDADPGNAEALHRMGFIAGRRGDMDRALDLLTRSVER 73

Query: 76  RPNDLEIIKSYTMLLNSLELFKESVEILKNVSESDD--KIIEILGDAYLKTGKFNEAILQ 133
            P+   +    T+   +L   +  V   ++++   D       L +A    G+  EA+  
Sbjct: 74  APDADALFNLGTVHHRALRTEEAIVTYRRSLALRPDFPDCEYHLSEALQGAGRLEEALAA 133

Query: 134 YNNILERKPRYKEILAKKGTALVGLKKFDEALEIYEKVLKISPYDTE 180
            + +L R P +     + G     L +   A+  YE  L ++P D +
Sbjct: 134 LDILLGRHPHFPAGWRQHGDIAADLGRPGAAVHFYEMALALNPADEQ 180



 Score = 28.9 bits (63), Expect = 3e-04
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 1/154 (0%)

Query: 225 KLGKTNEALDLYTKVLEKHIQNYEPWCRVGLLYYDTEDYETAIYYLELANERNPLNPSIL 284
           K G+  E  DLY  +L+    N E   R+G +     D + A+  L  + ER P +   L
Sbjct: 22  KSGRLAEGEDLYALILDADPGNAEALHRMGFIAGRRGDMDRALDLLTRSVERAP-DADAL 80

Query: 285 VKLGRTYVKLRNYNKGLEFMEKALDKDSEYAKAWCYKGYILNLLERHYEAIDCYKKAISI 344
             LG  + +     + +    ++L    ++     +    L    R  EA+      +  
Sbjct: 81  FNLGTVHHRALRTEEAIVTYRRSLALRPDFPDCEYHLSEALQGAGRLEEALAALDILLGR 140

Query: 345 NKNDSKFWMHLSNVYKTIGKEDYSKEAYENAVNL 378
           + +    W    ++   +G+   +   YE A+ L
Sbjct: 141 HPHFPAGWRQHGDIAADLGRPGAAVHFYEMALAL 174