Pairwise Alignments

Query, 388 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

Subject, 274 a.a., hypothetical protein from Agrobacterium fabrum C58

 Score = 47.0 bits (110), Expect = 6e-10
 Identities = 32/135 (23%), Positives = 62/135 (45%)

Query: 139 ERKPRYKEILAKKGTALVGLKKFDEALEIYEKVLKISPYDTEVWKNIGNAFYTVKKYEKA 198
           ER P+ + +     + L+   K  +AL + +++   +P D EV    G +     + E+A
Sbjct: 71  ERNPKDRSVGMNYASVLMMTGKNTQALAVMQQIAIANPADREVLAAYGKSQAAAGQLEQA 130

Query: 199 IQFYDMYLNEHKGDFGVTLSKGDALRKLGKTNEALDLYTKVLEKHIQNYEPWCRVGLLYY 258
           +          + D+ +  ++G  L +LG++NEA   Y + L+    +      +G+ Y 
Sbjct: 131 LSTIQRAQTPDRPDWRLYSAEGAVLDQLGRSNEARSRYRQALDLKPNDPSVLSNLGMSYV 190

Query: 259 DTEDYETAIYYLELA 273
            + D  TA  YL+ A
Sbjct: 191 LSSDPRTAETYLQSA 205



 Score = 35.4 bits (80), Expect = 2e-06
 Identities = 28/139 (20%), Positives = 55/139 (39%), Gaps = 3/139 (2%)

Query: 21  EYYNSGKYQKSIEYFNKTLNSEPKNPDAWYFKGNAYHMLGKSKLAQDSYEKALSIRPNDL 80
           ++ N  + +++ E   K     PK+        +   M GK+  A    ++     P D 
Sbjct: 52  DHLNMEQLRQAEETAGKAYERNPKDRSVGMNYASVLMMTGKNTQALAVMQQIAIANPADR 111

Query: 81  EIIKSY---TMLLNSLELFKESVEILKNVSESDDKIIEILGDAYLKTGKFNEAILQYNNI 137
           E++ +Y         LE    +++  +     D ++    G    + G+ NEA  +Y   
Sbjct: 112 EVLAAYGKSQAAAGQLEQALSTIQRAQTPDRPDWRLYSAEGAVLDQLGRSNEARSRYRQA 171

Query: 138 LERKPRYKEILAKKGTALV 156
           L+ KP    +L+  G + V
Sbjct: 172 LDLKPNDPSVLSNLGMSYV 190



 Score = 32.7 bits (73), Expect = 1e-05
 Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 4/90 (4%)

Query: 1   MGLLSIFKSKDPKKLLETGTEYYNSGKYQKSIEYFNKTLNSEPKNPD--AWYFKGNAYHM 58
           M  ++I    D + L   G     +G+ ++++    +     P  PD   +  +G     
Sbjct: 100 MQQIAIANPADREVLAAYGKSQAAAGQLEQALSTIQRA--QTPDRPDWRLYSAEGAVLDQ 157

Query: 59  LGKSKLAQDSYEKALSIRPNDLEIIKSYTM 88
           LG+S  A+  Y +AL ++PND  ++ +  M
Sbjct: 158 LGRSNEARSRYRQALDLKPNDPSVLSNLGM 187