Pairwise Alignments

Query, 397 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 414 a.a., multidrug ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score = 63.2 bits (152), Expect = 1e-14
 Identities = 86/429 (20%), Positives = 181/429 (42%), Gaps = 66/429 (15%)

Query: 9   FAGRNITQKKTQ-------SFLTIIGVVIGILAIVSLISLGFGVQNYITSEITTI--GAN 59
           F G   T+ K +       S  ++IG+ +G+LA++ ++S+  G Q  ++S I  +   A 
Sbjct: 8   FIGTRYTRAKRRNRFVSFISMTSMIGLALGVLAMIVVLSVMNGFQREMSSRILGMVPHAT 67

Query: 60  VISVLPSQNFGGPAVSKNFNDNDVSAV--RNVRGVEEVVAAWFGSYELEYRDQSHYGNVL 117
           ++ V P  ++   A +   N    +AV    + G+     A     E+   D +  G V 
Sbjct: 68  IVGVNPIDDWQPVAAAAMKNPQVTAAVPFTQMDGMFSYKGA-MQPIEISGIDPAQEGKVS 126

Query: 118 VIEPSKFTHVYSKTWGYEPYKGRWIEDSDKYSCMIGYALATNSFDREIDIGDKITI---- 173
           ++       V  K    +P          ++  ++G   A       +++GDK+T+    
Sbjct: 127 IVAQHI---VRGKLDDLKP---------GEFGVVVGEITARRF---RLNVGDKLTLIVPE 171

Query: 174 ----------NDKKYKVIGILEETGNPRTENSVILSKDVGEELFEINNEYNMMIVSVRSG 223
                       ++  V+GI +         ++I   D  E    I +     + SVR  
Sbjct: 172 ISTAPGGITPRMQRLNVVGIFKVGAELDGSMAMIHMADAAE----IQHWQPNQVQSVRLA 227

Query: 224 EDVNLVSEEIKDELEDSRGDENFSVLTAEQLAESINSIFEVLTIFLVGVAGISLLVGAVG 283
                 + ++  ++  S G    +    +    +  S+F  + +    +  + L++ AV 
Sbjct: 228 VKDLYAAPKVSSDIAASLG----AAYKPDDWTHTQGSLFSAMKMEKTMIGLLLLMIVAVA 283

Query: 284 ISN---TMHMSILERRKDIGILKALGAENTTILSIFVVEAGFLGLFGGIVGTMLGIL--- 337
             N   T+ M + ++  DI IL+ +GA    I++IF+V+   +G+ G ++G +LG++   
Sbjct: 284 AFNIIATLIMVVNDKGADIAILRTIGATPRQIMAIFMVQGTVIGIVGTLIGGVLGVIAAL 343

Query: 338 -IAKAIEYIAAISGYGLIRAWISW------EL----IVGVLVFSFVVGILSGYFPARSGA 386
            +++ + ++  ++G  +  + + +      EL    +V +    FV+  L+  +PA   A
Sbjct: 344 NVSELVGWVERVTGQHIFSSDVYFVSNLPSELQGGDVVLICTAGFVLSFLATLYPAYRAA 403

Query: 387 KLNPVDTLR 395
           K+ P   LR
Sbjct: 404 KIEPAHALR 412