Pairwise Alignments

Query, 397 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 401 a.a., ABC-type antimicrobial peptide transport system, permease component from Sphingobium sp. HT1-2

 Score =  184 bits (466), Expect = 5e-51
 Identities = 125/413 (30%), Positives = 215/413 (52%), Gaps = 39/413 (9%)

Query: 7   VSFAGRNITQKKTQSFLTIIGVVIGILAIVSLISLGFGVQNYITSEITTIGANVISVLPS 66
           V  A R I + K +SFLT +G++IG+ A+V++++LG G    +  +I+++GANV+ + P 
Sbjct: 6   VILAFRAINRHKMRSFLTTLGIIIGVAAVVTMVTLGNGATAAVREQISSLGANVLQLRPG 65

Query: 67  QNFG---GPAVSKNFNDNDVSAVRN----VRGVEEVV-AAWFGSYELEYRDQSHYGNVLV 118
           Q FG   G     NF + D++A+ N    VR V  VV ++    YE      + YG    
Sbjct: 66  QGFGRGGGGPRPPNFKEADLTAIENQLTGVRAVAPVVQSSGTAIYEGNNWSTTVYGT--- 122

Query: 119 IEPSKFTHVYSKTWGYEPYKGRWI----EDSDKYSCMIGYALATNSFDREIDIGDKITIN 174
                 T  YS+   +   +GR      E++ K  C+IG  + TN F     IG ++ I 
Sbjct: 123 ------TSAYSQVQSWNVSEGRLFMPDEEEAGKSVCIIGNTVRTNLFQGNDPIGKRMRIK 176

Query: 175 DKKYKVIGILEETGNPR---TENSVILSKDVGEELFEINNEYNMMIVSVRSGEDVNLVSE 231
               +V+G+L   G       ++ V++     +  F  + + + ++V+V    D   V +
Sbjct: 177 GVSCQVVGVLATRGQGGFGDQDDVVVMPIKFVQRRFTGDRDISQIMVAVDDAYDSATVQD 236

Query: 232 EIKDELEDSR-----GDENFSVLTAEQLAESINSIFEVLTIFLVGVAGISLLVGAVGISN 286
            ++  + + R      ++NF+V   +Q+++++     +LT  +  VA ISLLVG +GI N
Sbjct: 237 SLEQLMRERRKIKAGAEDNFNVFDTKQISDTLTGTTTILTQIVAAVAAISLLVGGIGIMN 296

Query: 287 TMHMSILERRKDIGILKALGAENTTILSIFVVEAGFLGLFGGIVGTMLGILIAKAIEYIA 346
            M +S+ ER ++IGI  A+GA    +L  F+VEA  L   GG++G ++ +        IA
Sbjct: 297 IMLVSVTERTREIGIRLAIGAVAREVLMQFLVEAIVLSCMGGLIGLVIAL--------IA 348

Query: 347 AISGYGLIRAWISWELIVGVLVFSF--VVGILSGYFPARSGAKLNPVDTLRGE 397
           ++    L++   +++  V ++ F F   +G++ GYFPAR  A LNP+D LR E
Sbjct: 349 SVGIAPLMKVPFTFDPQVNLIAFLFSAAIGVVFGYFPARRAASLNPIDALRHE 401